Late Pleistocene population expansion of Scylla paramamosain along the coast of China: A population dynamic response to the Last Interglacial sea level highstand

He, Lijun; Zhang, Aibing; Weese, David; Zhu, Chao‐Dong; Jiang, Chengwei; Qiao, Zhang

doi:10.1016/j.jembe.2010.01.019

Cited by 56 publications

(47 citation statements)

References 64 publications

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“…In the current study, statistically significant genetic differentiation was detected across 11 locations along the southeastern coast of China (F ST 0.0183, P<0.05), but the F ST value was still low (<0.05), suggesting a low level of genetic differentiation (Wright, 1978). A similar finding was reported in earlier studies, which suggested a low differentiation in S. paramamosain using mtDNA (Lu et al, 2009;He et al, 2010;Ma et al, 2011a). The above information indicates that all locations of S. paramamosain should be a single genetically homogeneous population.…”

Section: Discussionsupporting

confidence: 89%

“…For the shrimp Fenneropenaeus chinensis, no significant population genetic differentiation between the Yellow Sea and Bohai Sea was found using both microsatellite DNA and mtDNA (Liu et al, 2006;Li et al, 2009b). For the crab S. paramamosain, a genetically homogeneous population structure with high gene flow was observed among most localities along the coasts of the East China Sea and South China Sea using mtDNA (He et al, 2010). In the current study, statistically significant genetic differentiation was detected across 11 locations along the southeastern coast of China (F ST 0.0183, P<0.05), but the F ST value was still low (<0.05), suggesting a low level of genetic differentiation (Wright, 1978).…”

Section: Discussionmentioning

confidence: 99%

“…In order to conserve and sustainably harvest this important crab resource, genetic studies are necessary as they enable a better understanding of genetic diversity and structure (Dickerson et al, 2010), allow investigation of phylogenetic and evolutionary history (Gvozdík et al, 2010;Van Syoc et al, 2010), and also provide constructive guidance for resource conservation and management (Ortega-Villaizan Romo et al, 2006). A mitochondrial DNA (mtDNA) study of S. paramamosain indicated a genetically homogeneous population structure and a recent population expansion event (He et al, 2010). Moreover, again using mtDNA, a high level of genetic diversity and low genetic differentiation at different locations were observed in S. paramamosain inhabiting the southeastern coast of China (Lu et al, 2009;Ma et al, 2011a).…”

Section: Introductionmentioning

confidence: 99%

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High genetic diversity and low differentiation in mud crab (Scylla paramamosain) along southeastern coast of China revealed by microsatellite markers

Cui

et al. 2012

Journal of Experimental Biology

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SUMMARYThe mud crab (Scylla paramamosain) is a carnivorous portunid crab, mainly distributed along the southeastern coast of China. Mitochondrial DNA analysis in a previous study indicated a high level of genetic diversity and a low level of genetic differentiation. In this study, population genetic diversity and differentiation of S. paramamosain were investigated using nine microsatellite markers. In total, 397 wild specimens from 11 locations on the southeastern coast of China were sampled and genotyped. A high level of genetic diversity was observed, with the number of alleles, and the observed and expected heterozygosity per location in the range 7.8-

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Section: Discussionsupporting

confidence: 89%

Section: Discussionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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High genetic diversity and low differentiation in mud crab (Scylla paramamosain) along southeastern coast of China revealed by microsatellite markers

Cui

et al. 2012

Journal of Experimental Biology

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“…Historical demography patterns of Ascaris populations from humans and pigs Historical demography was inferred by using Tajima's D (Tajima 1989a, b) and Fu's Fs methods (Fu 1997) which were recognized to be sensitive to the population expansion history in the absence of selection (He et al 2010). DnaSP 5.0 was also employed to test the deviations from neutrality (as it would be expected under population expansion).…”

Section: Methodsmentioning

confidence: 99%

Phylogeography of Ascaris lumbricoides and A. suum from China

Zhou

Yuan

et al. 2011

Parasitol Res

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In order to obtain further understanding of genetic structure and evolutionary relationship of Ascaris from humans and pigs, phylogeography study on 12 populations from six endemic regions in China was conducted using mitochondrial DNA markers (cytochrome c oxidase subunit 1 (COX1) and NAD1) and the software programs of DnaSP 5.0, Arlequin 3.0, MEGA 4.0, and NETWORK 4.5.1.6. Results showed that (a) genetic diversity of Ascaris varied with hosts and locations, but no distinct geographical distribution pattern was found, (b) a higher level of genetic diversity and differentiation was found in pig-derived populations in contrast to human-derived ones, and in populations of human-derived Ascaris from the southern regions in comparison to that from the middle and northern locations, but similar geographical difference was not observed within pig-derived populations, (c) historical population expanding was detected from a large part of human-derived Ascaris populations but not in pig-derived Ascaris, (d) a high level of gene flow was detected between human- and pig-derived Ascaris and also among human-derived populations, and (e) network analysis from haplotype of COX1 indicated an ancestral haplotype from human-derived Ascaris. In conclusion, the present study revealed new information on Ascaris on the aspects of genetic diversity, population differentiation and historical demographic patterns, gene flow, phylogenesis reconstruction, and haplotype network, discussed the results with historical demographic migration of humans and domestication of wild boar in China, and raised a different assumption about the evolutionary relationship of the two roundworms. This study should have certain enlightenment for the epidemiology and the evolutionary and taxonomy relationship of Ascaris from humans and pigs.

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“…This was particularly true for marine organisms of oceans and marginal seas91011. The advancing terrestrial ice sheets and falling sea level during glacial periods exposed shallow coastal continental shelves121314, greatly reducing habitat availability for many marine taxa.…”

mentioning

confidence: 99%

Demographic response of cutlassfish (Trichiurus japonicus and T. nanhaiensis) to fluctuating palaeo-climate and regional oceanographic conditions in the China seas

Zhang

Weese

et al. 2014

Sci Rep

Self Cite

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Glacial cycles of the Quaternary have heavily influenced the demographic history of various species. To test the evolutionary impact of palaeo-geologic and climatic events on the demographic history of marine taxa from the coastal Western Pacific, we investigated the population structure and demographic history of two economically important fish (Trichiurus japonicus and T. nanhaiensis) that inhabit the continental shelves of the East China and northern South China Seas using the mitochondrial cytochrome b sequences and Bayesian Skyline Plot analyses. A molecular rate of 2.03% per million years, calibrated to the earliest flooding of the East China Sea shelf (70–140 kya), revealed a strong correlation between population sizes and primary production. Furthermore, comparison of the demographic history of T. japonicus populations from the East China and South China Seas provided evidence of the postglacial development of the Changjiang (Yangtze River) Delta. In the South China Sea, interspecific comparisons between T. japonicus and T. nanhaiensis indicated possible evolutionary responses to changes in palaeo-productivity that were influenced by East Asian winter monsoons. This study not only provides insight into the demographic history of cutlassfish but also reveals potential clues regarding the historic productivity and regional oceanographic conditions of the Western Pacific marginal seas.

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Late Pleistocene population expansion of Scylla paramamosain along the coast of China: A population dynamic response to the Last Interglacial sea level highstand

Cited by 56 publications

References 64 publications

High genetic diversity and low differentiation in mud crab (Scylla paramamosain) along southeastern coast of China revealed by microsatellite markers

High genetic diversity and low differentiation in mud crab (Scylla paramamosain) along southeastern coast of China revealed by microsatellite markers

Phylogeography of Ascaris lumbricoides and A. suum from China

Demographic response of cutlassfish (Trichiurus japonicus and T. nanhaiensis) to fluctuating palaeo-climate and regional oceanographic conditions in the China seas

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