Identification of genetic families based on mitochondrial D-loop sequence in population of the Tatra chamois (Rupicapra rupicapra tatrica)

Moravčíková, Nina; Židek, Radoslav; Kasarda, Radovan; Jakabová, D.; Genčík, Martin; Pokorádi, Jaroslav; Majko, Pavol; Feriancová, Erika

doi:10.2478/s11756-019-00313-z

Cited by 4 publications

(3 citation statements)

References 17 publications

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“…For example, in the study of chamois ( Rupicapra sp.) 26 , native European mountain ungulate, D-loop haplotypes from the same subspecies were up to 15 mutations apart. In its native range in North Africa, six aoudad subspecies have been described, based on their distribution and morphological differences in coat color and horns 27 .…”

Section: Discussionmentioning

confidence: 99%

Population structure and genetic diversity of non-native aoudad populations

Stipoljev

Safner

Gančević

et al. 2021

Sci Rep

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The aoudad (Ammotragus lervia Pallas 1777) is an ungulate species, native to the mountain ranges of North Africa. In the second half of the twentieth century, it was successfully introduced in some European countries, mainly for hunting purposes, i.e. in Croatia, the Czech Republic, Italy, and Spain. We used neutral genetic markers, the mitochondrial DNA control region sequence and microsatellite loci, to characterize and compare genetic diversity and spatial pattern of genetic structure on different timeframes among all European aoudad populations. Four distinct control region haplotypes found in European aoudad populations indicate that the aoudad has been introduced in Europe from multiple genetic sources, with the population in the Sierra Espuña as the only population in which more than one haplotype was detected. The number of detected microsatellite alleles within all populations (< 3.61) and mean proportion of shared alleles within all analysed populations (< 0.55) indicates relatively low genetic variability, as expected for new populations funded by a small number of individuals. In STRUCTURE results with K = 2–4, Croatian and Czech populations cluster in the same genetic cluster, indicating joined origin. Among three populations from Spain, Almeria population shows as genetically distinct from others in results, while other Spanish populations diverge at K = 4. Maintenance of genetic diversity should be included in the management of populations to sustain their viability, specially for small Czech population with high proportion of shared alleles (0.85) and Croatian population that had the smallest estimated effective population size (Ne = 5.4).

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Section: Discussionmentioning

confidence: 99%

Population structure and genetic diversity of non-native aoudad populations

Stipoljev

Safner

Gančević

et al. 2021

Sci Rep

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“…Moreover, results indicated in the population of Tatra Chamois' presence of new (till now not explored) haplotype. From the analysis of geographical distribution was observed that population with this haplotype inhabits predominantly Western Tatras (Moravčíková et al, 2020b).…”

Section: B) Evaluation Of Differentiation Based On Mtdnamentioning

confidence: 97%

Use of High-density SNP analyses to develop a long-term strategy for conventional populations to prevent loss of diversity - review

Moravčíková¹,

Kasarda

2020

Acta fytotechn zootechn

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“…An integral part of the genetic diversity monitoring of cattle and horse breeds was the evaluation of observed heterozygosity (H o ) and gene diversity (H e ), the average number of alleles (MNA), effective number of Alleles (A ne ), Shannon information index (I) in case of STR markers solely (Kasarda et al, 2016d;Vostrá Vydrová et al, 2018). Wright´s FIS index as the molecular equivalent of inbreeding coefficient calculated based on pedigree information, genomic inbreeding coefficient based on the distribution of homozygous segments (ROH) in the genome, inbreeding coefficient (F) and its increase (∆F) based on pedigree analysis (Kadlečík et al, 2016Kasarda et al, 2017a;, level of population fragmentation based on F-statistics and analysis of molecular variance (AMOVA), Nei genetic distances at intra-and inter-population level (D a ), migration level and genetic drift intensity (Kukučková et al, 2016c;Kukučková et al, 2018b;Moravčíková et al, 2020), present and historical effective population size (N e ) based on molecular and pedigree data (Kadlečík et al, 2106;Kukučková et al, 2016b;Moravčíková et al, 2017d).…”

Section: Research Of Genetic Diversity As a Base For The Protection Of Animal Food Resourcesmentioning

confidence: 99%

Genetic diversity and production potential of animal food resources: Review article

Kasarda

Jamborová²,

Moravčíková³

2020

Acta fytotechn zootechn

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The submission aims to present results of the five-year research project, oriented on the evaluation of genetic diversity of selected populations of economically important animal species in Slovakia, their sustainable adaptation and production potential in the context of preservation of genetic resources and food safety. Under the supervision of Department of Animal Genetics and Breeding Biology, Faculty of Agrobiology and Food Resources of the Slovak University of Agriculture in Nitra run between 2015-2019 project called Molecular-genetic diversity and production potential of animal genetic resources in Slovakia (APVV-14-0054). Considering the difficulty and complexity of studied issues was research realized in close collaboration with the University of Natural Resources and Life Sciences Vienna (BOKU) and Zagreb University. Erosion of genetic diversity represents the main threat for food safety of mankind. Individuals of economically important animal species groups accumulate risks and threats of loss of sustainable adaptation as a reaction to the environment due to intense selective breeding. It is therefore important and needed to focus on permanent monitoring and evaluation of diversity of economically important breeds based on the diverse parameter and suitable methods.

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Identification of genetic families based on mitochondrial D-loop sequence in population of the Tatra chamois (Rupicapra rupicapra tatrica)

Cited by 4 publications

References 17 publications

Population structure and genetic diversity of non-native aoudad populations

Population structure and genetic diversity of non-native aoudad populations

Use of High-density SNP analyses to develop a long-term strategy for conventional populations to prevent loss of diversity - review

Genetic diversity and production potential of animal food resources: Review article

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