The efficient analysis of small-molecule mixtures underlies many endeavors in chemical biology. The sensitivity of mass spectrometry (MS) has resulted in its widespread adoption for such analyses, and today rapid automated LC-MS analyses are widely used. Several recent studies have demonstrated the feasibility of NMR spectroscopic analyses of complex smallmolecule mixtures, including the use of diffusion-ordered spectroscopy (DOSY) [1] or principal component analysis (PCA) in metabolomics, [2] as well as the characterization of crude unfractionated natural product extracts using routine two-dimensional NMR spectra.[3] Compared to MS analyses, 2D NMR spectroscopic investigations of small-molecule mixtures offer the benefit of more detailed structural information, which is of particular relevance for the detection of novel chemotypes. However, the complexity of 2D spectra typically obtained for small-molecule mixtures has limited a broader implementation of NMR spectroscopy for their characterization. Herein, we describe a simple procedure for the differential analysis of arrays of 2D NMR spectra and demonstrate its utility for the detection of new natural products from a small library of fungal extracts.Fungi are prolific producers of natural products derived from terpene, [4] polyketide, [5] and nonribosomal peptide pathways.[6] Several lines of evidence indicate that only a fraction of the biosynthetic capabilities of fungi (and other cultured organisms) are discovered in traditional screening operations, as most secondary metabolite pathways are not expressed under the culture conditions used. Various approaches are being pursued to increase the accessible fraction of fungal metabolomes, and anecdotal evidence suggests that fungi respond to even small variations in their culturing protocol by starting (or stopping) the biosynthesis of specific natural products. [7][8][9][10][11] Clearly, a more systematic exploration of factors modulating secondary metabolite biosynthesis in fungi (and, by the same token, in bacteria) would be highly desirable. In a pilot study, we used differential analyses of 2D NMR spectra for the characterization of a small library of fungal extracts derived from a Tolypocladium cylindrosporum strain, cultured with a variety of protocols, which quickly revealed two new terpenoid indole alkaloids.T. cylindrosporum strain TC705 was selected from a group of insect-pathogenic fungi [12] because it has a number of nonribosomal peptide and polyketide biosynthetic genes that suggest a high metabolic potential for the production of secondary metabolites.[13] For our studies, TC705 cultures were grown using seven different protocols, based on four different media (YM, SDY, mEM, and diEM; see Supporting Information for full details). Three protocols (YM-SDY, YMmEM, and YM-diEM) included growing cultures in a twostep fermentation procedure, whereby each culture is initiated using a nutrient-rich medium and then transferred to a minimal or partially nutrient-deficient medium.[14] For subsequent NMR spe...