Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment

Khan, Shams Tabrez; Nakagawa, Yasuyoshi; Harayama, Shigeaki

doi:10.1099/ijs.0.65554-0

Cited by 19 publications

(7 citation statements)

References 27 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The major fatty acids (.10 % of the total) detected in strain YCS-9 T were iso-C 15 : 1 G, iso-C 15 : 0 and iso-C 17 : 0 3-OH (Table 2). Strain YCS-9 T could not be clearly differentiated from the other members of the family Flavobacteriaceae by fatty acid composition (Asker et al, 2007;Khan et al, 2007Khan et al, , 2008Nedashkovskaya et al, 2008;Lee et al, 2010). Nevertheless, there were noteworthy differences in the proportions of some fatty acids between strain YCS-9 T and F. tottoriensis NBRC 102624 T , particularly iso-C 15 : 0 , C 16 : 0 3-OH and iso-C 17 : 0 3-OH (Table 2).…”

mentioning

confidence: 98%

Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter

Yoon

Lee

Jung

2013

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

mentioning

confidence: 98%

Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter

Yoon

Lee

Jung

2013

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

“…The family Flavobacteriaceae , established by Reichenbach (1989) and emended by Bernardet et al (1996, 2002), of which members approximately account for 110 genera (http://www.bacterio.net; Parte, 2014), constitutes one of the major phylogenetic lineages within the phylum Bacteroidetes . Members of the family are widely distributed in global ecosystems, such as polar regions (Gosink et al , 1998), desert soil (Peng et al , 2009), freshwater (Wang et al , 2006) and marine environments (Khan et al , 2008; Yang et al , 2007; Lee et al , 2008) including deep-seawater (Qin et al , 2007). Recent studies have shown that some members of this family possess light-activated H + -, Na + - and Cl − - ion pumping rhodopsins (Gómez-Consarnau et al , 2007; Yoshizawa et al , 2012, 2014).…”

mentioning

confidence: 99%

Aurantivirga profunda gen. nov., sp. nov., isolated from deep-seawater, a novel member of the family Flavobacteriaceae

Song

Choi

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

Aurantivirga profunda gen. nov., sp. nov., isolated from deep-seawater, a novel member of the family Flavobacteriaceae , was isolated from deep seawater in the Pacific Ocean. 16S rRNA gene sequence analysis revealed that the strain could be affiliated with the family Flavobacteriaceae of the phylum Bacteroidetes and shared less than 94.6 % similarity with other species of the family with validly published names. The phenotypic characteristics of this novel isolate, such as growth properties and enzyme activities, could be differentiated from those of other species. The strain was non-motile, oxidase-positive and catalase-negative. The G+C content of the genomic DNA was determined to be 34.8 mol% and menaquinone-6 (MK-6) was the predominant isoprenoid quinone. The predominant fatty acids were iso-C 15 : 0 , iso-C 15 : 1 G, iso-C 16 : 0 3-OH, iso-C 17 : 0 3-OH and iso-C 15 : 0 3-OH. The major polar lipids comprised phosphatidylethanolamine, three unknown aminolipids and three unknown lipids. On the basis of the taxonomic data collected in this study, it was concluded that strain SAORIC-234 T represents a novel genus and species in the family Flavobacteriaceae, for which the name Aurantivirga profunda gen. nov., sp. nov. is proposed. The type strain of the type species, Aurantivirga profunda sp. nov., is SAORIC-234

show abstract

“…Most members of the family have been isolated from diverse marine environments including the deep sea (Einen & Øvreås, 2006;Romanenko et al, 2007), sediment (Khan et al, 2008), Antarctic water (Bowman et al, 1997;Macián et al, 2002) and marine plants or animals (Nedashkovskaya et al, 2005;Bae et al, 2007).…”

mentioning

confidence: 99%

Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater

Joung

Song

Lee

et al. 2010

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater Phylogenetic analyses showed that strain HM0024 T formed an independent phyletic line of descent within the family Flavobacteriaceae. The DNA G+C content of the strain was 29.6 mol% and its major cellular fatty acids (.10 %) were iso-C 15 : 0 , iso-C 17 : 0 3-OH, iso-C 17 : 1 v7c and summed feature 3 (C 16 : 1 v6c and/or C 16 : 1 v7c). The major isoprenoid quinone was MK-6 and the major polar lipids were phosphatidylethanolamine and several aminolipids. Strain HM0024 T was differentiated from phylogenetically related members of the family by having lower DNA G+C content, larger proportions of summed feature 3, anteiso-C 15 : 0 and iso-C 16 : 0 3-OH and particular phenotypic characteristics. On the basis of phenotypic and phylogenetic data, strain HM0024 T is classified as a representative of a novel genus and species, for which the name A seawater sample from the coastal surface of the Yellow Sea (Buan beach, Korea; 35 u 409 N 126 u 319 E) was serially diluted, spread onto nutrient agar (NA; BD Difco) and incubated aerobically at 30 u C. After 2 days of incubation, a yellow colony-forming strain, designated HM0024 T , was isolated and stored as a suspension in nutrient broth (NB; BD Difco) with 15 % (v/v) glycerol. For further taxonomic studies, the strain was maintained routinely at 30 u C on NA.The methods employed for DNA extraction, PCR amplification and sequencing of the 16S rRNA gene were essentially the same as described in a previous study (Cho & Giovannoni, 2003). The almost-complete 16S rRNA gene sequence (1449 bp) of strain HM0024T was aligned automatically using the PT server implemented in the ARB software package (Ludwig et al., 2004) and the alignment was checked manually. 16S rRNA gene sequence similarities were calculated from the sequence alignment in the ARB package and were confirmed by the EzTaxon server (Chun et al., 2007). Sequence comparisons showed that strain HM0024T was closely associated with several members of the genera Chryseobacterium and Elizabethkingia of the family Flavobacteriaceae. The strain was most closely related to Chryseobacterium balustinum LMG 8329 T (94.4 %), Chryseobacterium scophthalmum LMG 13028 T (94.4 %), Chryseobacterium piscium LMG 3These authors contributed equally to this work.The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain HM0024 T is FJ713810.

show abstract

Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment

Cited by 19 publications

References 27 publications

Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter

Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter

Aurantivirga profunda gen. nov., sp. nov., isolated from deep-seawater, a novel member of the family Flavobacteriaceae

Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater

Contact Info

Product

Resources

About