The usage of biogas as a potential fuel in a spark ignition (SI) engine is the theme for the present study. The exhaust gas recirculation (EGR) is a significant technique for improving the performance of the SI engine. Thus, the novelty of the experimental investigations lies in implementing the EGR technique for emission control of the biogas-fueled engine. The raw biogas (52% methane and 47% carbon dioxide), obtained from a biogas digester (using cow dung as the source), was the engine fuel for a four stroke, water cooled, variable compression ratio SI engine set-up. Here, the engine performance and emission related parameters were measured. When operated in the raw biogas mode at an optimum spark timing of 45 °CA before the top dead center, the engine produced maximum torques of 11 N m, 14 N m, and 16 N m for compression ratios 8, 9, and 10, respectively. The effect of different EGR rates on the emission control was also investigated. The net heat release rate without EGR was found to be 22.623J/°CA at 368 °CA, which further reduced to 14.233 J/°CA at 386 °CA for EGR10. Moreover, it was clearly evident that low EGR rates (below 10%) were effective in reducing NOX significantly, with minor compromise in power and brake specific fuel consumption. But the emissions of hydrocarbon and carbon monoxide were found to be higher with the increase in EGR. The operation of the engine with medium or heavy EGR rates resulted in issues related to intense pressure fluctuations and large cycle-to-cycle variation in performance. Thus, the present investigations recommend the use of low EGR (below 10%) in a biogas-based engine for lower NOX emission and better fuel efficiency.