Long-term quantification of sea ice production in coastal polynyas (thin sea ice areas) is an important issue to understand the global overturning circulation and its changes. The Special Sensor Microwave/Imager (SSM/I), which has nearly 30 years of observation, is a powerful tool for that purpose owing to its ability to detect thin ice areas. However, previous SSM/I thin ice thickness algorithms differ between regions, probably due to the difference in dominant type of thin sea ice in each region. In this study, we developed an SSM/I thin ice thickness algorithm that accounts for three types of thin sea ice (active frazil, thin solid ice, and a mixture of two types), using the polarization and gradient ratios. The algorithm is based on comparison with the ice thickness derived from the MODerate resolution Imaging Spectroradiometer (MODIS) for 22 polynya events off the Ross Ice Shelf, off Cape Darnley, and off the Ronne Ice Shelf in the Southern Ocean. The algorithm can properly discriminate the ice type in coastal polynyas and estimate the thickness of thin sea ice (≤20 cm) with an error range of less than 6 cm. We also confirmed that the algorithm can be applied to other passive microwave radiometers with higher spatial resolution to obtain more accurate and detailed distributions of ice type and thickness. The validation of this algorithm in the Arctic Ocean, suggests its applicability to the global oceans.