“…This is likely attributable to many factors, including the difficulty of obtaining and integrating observational data at the large spatio‐temporal scales required (Jones et al ., 2006; Bohmann et al ., 2014; Dietze et al ., 2018; Estes et al ., 2018; Compagnoni et al ., 2019). Although there are fewer examples in the literature, HMMs have been used to make ecosystem‐level inferences about stability and regime shifts (Gal and Anderson, 2010; Gennaretti et al ., 2014; Economou and Menary, 2019), climate‐driven community and disease dynamics (Moritz et al ., 2008; Martinez et al ., 2016; Miller et al ., 2018a), the effects of management action on habitat dynamics (Breininger et al ., 2010), climatic niches (Tingley et al ., 2009) and ecosystem health (Xiao et al ., 2019). HMMs are also frequently used by atmospheric scientists, hydrologists and landscape ecologists to describe regional‐ to global‐scale ecosystem processes such as precipitation (Zucchini and Guttorp, 1991; Srikanthan and McMahon, 2001), streamflow (Jackson, 1975; Bracken et al ., 2014), wetland dynamics (Siachalou et al ., 2014) and land cover dynamics (Aurdal et al ., 2005; Lazrak et al ., 2010; Trier and Salberg, 2011; Abercrombie and Friedl, 2015; Siachalou et al ., 2015).…”