Draft Genome Sequence of Vibrio parahaemolyticus SNUVpS-1 Isolated from Korean Seafood

Jun, Jin Woo; Kim, Ji Hyung; Choresca, Casiano H.; Shin, Sook; Han, Jee Eun; Park, Taesung

doi:10.1128/genomea.00132-12

Cited by 7 publications

(3 citation statements)

References 9 publications

(11 reference statements)

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“…Unlike V. cholerae , for which the genomes of well over 100 strains have been sequenced over the past 13 years, only a few V. parahaemolyticus strains have been completely sequenced and/or annotated to date (Table 1 ) (Boyd et al, 2008 ; Chen et al, 2011 ; Gonzalez-Escalona et al, 2011 ; Jensen et al, 2013 ; Jun et al, 2013 ; Liu and Chen, 2013 ). Nevertheless, since the first strain, RIMD 2210633, was sequenced (Makino et al, 2003 ), several comparative studies have identified new genomic islands (GIs).…”

Section: Comparative Genomics: Pathogenicity Islands and The Dynamic mentioning

confidence: 99%

Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors

Ceccarelli

Hasan

Huq

et al. 2013

Front. Cell. Infect. Microbiol.

187

157

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Vibrio parahaemolyticus, autochthonous to estuarine, marine, and coastal environments throughout the world, is the causative agent of food-borne gastroenteritis. More than 80 serotypes have been described worldwide, based on antigenic properties of the somatic (O) and capsular (K) antigens. Serovar O3:K6 emerged in India in 1996 and subsequently was isolated worldwide, leading to the conclusion that the first V. parahaemolyticus pandemic had taken place. Most strains of V. parahaemolyticus isolated from the environment or seafood, in contrast to clinical strains, do not produce a thermostable direct hemolysin (TDH) and/or a TDH-related hemolysin (TRH). Type 3 secretion systems (T3SSs), needle-like apparatuses able to deliver bacterial effectors into host cytoplasm, were identified as triggering cytotoxicity and enterotoxicity. Type 6 secretion systems (T6SS) predicted to be involved in intracellular trafficking and vesicular transport appear to play a role in V. parahaemolyticus virulence. Recent advances in V. parahaemolyticus genomics identified several pathogenicity islands (VpaIs) located on either chromosome in both epidemic and pandemic strains and comprising additional colonization factors, such as restriction-modification complexes, chemotaxis proteins, classical bacterial surface virulence factors, and putative colicins. Furthermore, studies indicate strains lacking toxins and genomic regions associated with pathogenicity may also be pathogenic, suggesting other important virulence factors remain to be identified. The unique repertoire of virulence factors identified to date, their occurrence and distribution in both epidemic and pandemic strains worldwide are described, with the aim of highlighting the complexity of V. parahaemolyticus pathogenicity as well as its dynamic genome.

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Section: Comparative Genomics: Pathogenicity Islands and The Dynamic mentioning

confidence: 99%

Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors

Ceccarelli

Hasan

Huq

et al. 2013

Front. Cell. Infect. Microbiol.

187

157

View full text Add to dashboard Cite

show abstract

“…parahaemolyticus in the NCBI database (Supplementary Table 1) (Jun et al, 2013, Gomez-gil et al, 2014, Gomez-Jimenez et al, 2014, Kondo et al, 2014, Yang et al, 2014, Castillo et al, 2015, Kondo et al, 2015. All newly sequenced isolates exhibited more than 95% pairwise average nucleotide identity (ANI) to V. parahaemolyticus ATCC 17802 (Supplementary Figure 1).…”

Section: Genomic Characterization and In-silico Taxonomic Validation Of Sequenced Strainsmentioning

confidence: 99%

“…The increasing genomic representation of Vibrio sequences in public database enables a more comprehensive analysis and understanding of the evolutionary relationships among different species and strains (Osama et al, 2012, Jun et al, 2013, Gomez-gil et al, 2014, Gomez-Jimenez et al, 2014, Kondo et al, 2014, Yang et al, 2014, Castillo et al, 2015. The generation of high-quality draft genomes also allows the extraction of full-length house-keeping genes used for multilocus sequencing typing (MLST), precluding the laborious steps associated with amplification and sequencing of multiple PCR fragments (Osama et al, 2012, Joensen et al, 2014, Kavousi et al, 2016.…”

Section: Introductionmentioning

confidence: 99%

Genomic characterization of Vibrio parahaemolyticus from Pacific white shrimp and rearing water in Malaysia reveals novel sequence types and structural variation in genomic regions containing the Photorhabdus insect-related (Pir) toxin-like genes

Yan

Austin

Ayub

et al. 2019

FEMS Microbiology Letters

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The Malaysian and global shrimp aquaculture production has been significantly impacted by acute hepatopancreatic necrosis disease (AHPND) typically caused by Vibrio parahaemolyticus harboring the pVA plasmid containing the pirAVp and pirBVp genes, which code for Photorhabdus insect-related (Pir) toxin. The limited genomic resource for V. parahaemolyticus strains from Malaysian aquaculture farms precludes an in-depth understanding of their diversity and evolutionary relationships. In this study, we isolated shrimp-associated and environmental (rearing water) V. parahaemolyticus from three aquaculture farms located in Northern and Central Malaysia followed by whole-genome sequencing of 40 randomly selected isolates on the Illumina MiSeq. Phylogenomic analysis and multilocus sequence typing (MLST) reveal distinct lineages of V. parahaemolyticus that harbor the pirABVp genes. The recovery of pVA plasmid backbone devoid of pirAVp or pirABVp in some V. parahaemolyticus isolates suggests that the toxin genes are prone to deletion. The new insight gained from phylogenomic analysis of Asian V. parahaemolyticus, in addition to the observed genomic instability of pVa plasmid, will have implications for improvements in aquaculture practices to diagnose, treat or limit the impacts of this disease.

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Phylogenetic relationships and antibiotic resistance of Vibrio parahaemolyticus isolates related to acute hepatopancreatic necrosis disease in Korea

Kim¹,

Rajapaksha

Gunasekara

et al. 2021

Aquaculture

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Draft Genome Sequence of Vibrio parahaemolyticus SNUVpS-1 Isolated from Korean Seafood

Cited by 7 publications

References 9 publications

Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors

Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors

Genomic characterization of Vibrio parahaemolyticus from Pacific white shrimp and rearing water in Malaysia reveals novel sequence types and structural variation in genomic regions containing the Photorhabdus insect-related (Pir) toxin-like genes

Phylogenetic relationships and antibiotic resistance of Vibrio parahaemolyticus isolates related to acute hepatopancreatic necrosis disease in Korea

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