ABSTRACT:Fish assemblages play an integral role in stream ecosystem and are influenced by stream environmental conditions and habitat disturbances. Fish community structures and habitat parameters of U.S. EPA rapid bio-assessment protocol were surveyed to investigate the effect of stream environment and habitat disturbance on fish communities at 13 study sites in the Gapyeong Stream, a typical gravel-bed stream. Principal component analysis (PCA) based on data from habitat assessment at each study site indicated that the study sites were differentiated by habitat parameters such as embeddedness, velocity/depth regime and sediment deposition, which were related with bed slope. A total of 46 species belonging to 12 families were collected in the Gapyeong Stream. A dominant species was Zacco koreanus, subdominant species was Z. platypus. Hierarchical cluster analysis based on species abundance classified fish communities into the three main groups along the stream longitudinal change. Non-metric multidimensional scaling (NMDS) portrayed that fish community structures were related to major habitat parameters, i.e., epifaunal substrate/available cover, embeddedness, velocity/depth regime, sediment deposition, channel alternation and frequency of riffles. These results suggested that fish community structures were primary affected by the longitudinal environmental changes, and those were modified by habitat disturbance in the Gapyeong Stream, a gravel-bed stream.