We purified to homogeneity an enzyme from Citrobacter sp. strain KCTC 18061P capable of decolorizing triphenylmethane dyes. The native form of the enzyme was identified as a homodimer with a subunit molecular mass of about 31 kDa. It catalyzes the NADH-dependent reduction of triphenylmethane dyes, with remarkable substrate specificity related to dye structure. Maximal enzyme activity occurred at pH 9.0 and 60°C. The enzymatic reaction product of the triphenylmethane dye crystal violet was identified as its leuco form by UV-visible spectral changes and thin-layer chromatography. A gene encoding this enzyme was isolated based on its N-terminal and internal amino acid sequences. The nucleotide sequence of the gene has a single open reading frame encoding 287 amino acids with a predicted molecular mass of 30,954 Da. Although the deduced amino acid sequence displays 99% identity to the hypothetical protein from Listeria monocytogenes strain 4b H7858, it shows no overall functional similarity to any known protein in the public databases. At the N terminus, the amino acid sequence has high homology to sequences of NAD(P)H-dependent enzymes containing the dinucleotide-binding motif GXXGXXG. The enzyme was heterologously expressed in Escherichia coli, and the purified recombinant enzyme showed characteristics similar to those of the native enzyme. This is the first report of a triphenylmethane reductase characterized from any organism.Triphenylmethane dyes are aromatic xenobiotic compounds that are used extensively in many industrial processes, such as textile dyeing, paper printing, and food and cosmetic manufacture (11). Studies of the biodegradation of triphenylmethane dyes have focused primarily on the decolorization of dyes via reduction reactions. Several triphenylmethane dye-decolorizing microorganisms have been reported and their characteristics reviewed (2). The biochemical mechanism underlying the decolorization of triphenylmethane dyes has been elucidated in fungi (2,7,20,23) but not in bacteria. Triphenylmethane dyes are decolorized by lignin peroxidase of Phanerochaete chrysosporium (7). Laccase from the extracellular fluid of Cyathus bulleri (23) and peroxidase from Pleurotus ostreatus (20) also decolorize triphenylmethane dyes. The structural genes encoding lignin peroxidase and laccase have been cloned and characterized (8, 10). Although several triphenylmethane dye-decolorizing bacteria have been isolated (2), there are no reports of specific enzymes that decolorize these dyes. The decolorization of malachite green and crystal violet by intestinal microflora and several anaerobic bacteria proceeds through enzymatic reduction to their respective leuco derivatives (12, 16). However, the enzymes involved in this reduction have not yet been isolated or characterized in their purified forms. Their amino acid sequences and other biophysical parameters remain unknown.We recently isolated a new bacterium, Citrobacter sp. strain KCTC 18061P, that has a higher decolorization capability than any microorganism repor...