Comparative Transcriptomics Analysis and Functional Study Reveal Important Role of High-Temperature Stress Response Gene GmHSFA2 During Flower Bud Development of CMS-Based F1 in Soybean
Abstract:High-temperature (HT) is one of the most important environmental factors that negatively impact the yield of some soybean cytoplasmic male sterility (CMS)-based hybrid (F1) combinations. The response of soybean to HT, especially at the male organ development stage, is poorly understood. To investigate the molecular mechanisms of the response from soybean CMS-based F1 male organ to HT, a detailed transcriptomics analysis was performed during flower bud development of soybean HT-tolerant and HT-sensitive CMS-bas… Show more
“…In our previous study, two soybean CMS-based hybrid F 1 combinations, NF 1 (HT-tolerant) and YF 1 (HT-sensitive), were employed to explore the mechanism of male fertility stability under HT stress by RNA-Seq [ 9 ]. No difference was observed between the two soybean CMS-based F 1 combinations under normal temperature (NT) condition [ 9 ]. After HT stress treatment, the anthers of YF 1 were indehiscent, and the pollen fertility decreased significantly, whereas those of NF 1 were basic normal [ 9 ].…”
Section: Resultsmentioning
confidence: 99%
“…No difference was observed between the two soybean CMS-based F 1 combinations under normal temperature (NT) condition [ 9 ]. After HT stress treatment, the anthers of YF 1 were indehiscent, and the pollen fertility decreased significantly, whereas those of NF 1 were basic normal [ 9 ]. To determine whether miRNAs were implicated in male fertility regulation under HT stress in soybean, four independent small RNA libraries were constructed using RNAs from the same samples in a previous RNA-Seq analysis [ 9 ].…”
Section: Resultsmentioning
confidence: 99%
“…After HT stress treatment, the anthers of YF 1 were indehiscent, and the pollen fertility decreased significantly, whereas those of NF 1 were basic normal [ 9 ]. To determine whether miRNAs were implicated in male fertility regulation under HT stress in soybean, four independent small RNA libraries were constructed using RNAs from the same samples in a previous RNA-Seq analysis [ 9 ]. An average of about 17.9 million raw reads were obtained from each sample ( Table S1 ).…”
Section: Resultsmentioning
confidence: 99%
“…Anther dehiscence and inflorescence growth were observed during this period. For short-term extremely HT treatment, all plants were shifted from 23 • C to 42 • C as described previously [9], and then exposed to 42 • C at 75% RH for 4 h. Anther dehiscence and pollen fertility were observed during the 5 days of restoration at 23 • C. All types were grown at 23 • C as NT condition.…”
Section: Plant Materials Ht Treatment and Sample Collectionmentioning
confidence: 99%
“…For example, stamens of tomato are more sensitive to HT than pistil [ 6 ]. Furthermore, anther indehiscence and pollen abortion caused by HT stress are widespread in many crops, such as tomato [ 7 ], cotton [ 8 ], and soybean [ 9 , 10 ]. HT can change the epigenetic level of plants, including methylation [ 11 ] and microRNA (miRNA) [ 12 ], to achieve their response to HT stress.…”
MicroRNAs (miRNAs), a class of noncoding small RNAs (sRNAs), are widely involved in the response to high temperature (HT) stress at both the seedling and flowering stages. To dissect the roles of miRNAs in regulating male fertility in soybean cytoplasmic male sterility (CMS)-based F1 under HT, sRNA sequencing was performed using flower buds from HT-tolerant and HT-sensitive CMS-based F1 combinations (NF1 and YF1, respectively). A total of 554 known miRNAs, 59 new members of known miRNAs, 712 novel miRNAs, and 1145 target genes of 580 differentially expressed miRNAs (DEMs) were identified under normal temperature and HT conditions. Further integrated analysis of sRNA and transcriptome sequencing found that 21 DEMs and 15 differentially expressed target genes, such as gma-miR397a/Laccase 2, gma-miR399a/Inorganic phosphate transporter 1-4, and gma-miR4413a/PPR proteins, mitochondrial-like, were negatively regulated under HT stress. Furthermore, all members of the gma-miR156 family were suppressed by HT stress in both NF1 and YF1, but were highly expressed in YF1 under HT condition. The negative correlation between gma-miR156b and its target gene squamosa promoter-binding protein-like 2b was confirmed by expression analysis, and overexpression of gma-miR156b in Arabidopsis led to male sterility under HT stress. With these results, we proposed that miRNAs play an important role in the regulation of male fertility stability in soybean CMS-based F1 under HT stress.
“…In our previous study, two soybean CMS-based hybrid F 1 combinations, NF 1 (HT-tolerant) and YF 1 (HT-sensitive), were employed to explore the mechanism of male fertility stability under HT stress by RNA-Seq [ 9 ]. No difference was observed between the two soybean CMS-based F 1 combinations under normal temperature (NT) condition [ 9 ]. After HT stress treatment, the anthers of YF 1 were indehiscent, and the pollen fertility decreased significantly, whereas those of NF 1 were basic normal [ 9 ].…”
Section: Resultsmentioning
confidence: 99%
“…No difference was observed between the two soybean CMS-based F 1 combinations under normal temperature (NT) condition [ 9 ]. After HT stress treatment, the anthers of YF 1 were indehiscent, and the pollen fertility decreased significantly, whereas those of NF 1 were basic normal [ 9 ]. To determine whether miRNAs were implicated in male fertility regulation under HT stress in soybean, four independent small RNA libraries were constructed using RNAs from the same samples in a previous RNA-Seq analysis [ 9 ].…”
Section: Resultsmentioning
confidence: 99%
“…After HT stress treatment, the anthers of YF 1 were indehiscent, and the pollen fertility decreased significantly, whereas those of NF 1 were basic normal [ 9 ]. To determine whether miRNAs were implicated in male fertility regulation under HT stress in soybean, four independent small RNA libraries were constructed using RNAs from the same samples in a previous RNA-Seq analysis [ 9 ]. An average of about 17.9 million raw reads were obtained from each sample ( Table S1 ).…”
Section: Resultsmentioning
confidence: 99%
“…Anther dehiscence and inflorescence growth were observed during this period. For short-term extremely HT treatment, all plants were shifted from 23 • C to 42 • C as described previously [9], and then exposed to 42 • C at 75% RH for 4 h. Anther dehiscence and pollen fertility were observed during the 5 days of restoration at 23 • C. All types were grown at 23 • C as NT condition.…”
Section: Plant Materials Ht Treatment and Sample Collectionmentioning
confidence: 99%
“…For example, stamens of tomato are more sensitive to HT than pistil [ 6 ]. Furthermore, anther indehiscence and pollen abortion caused by HT stress are widespread in many crops, such as tomato [ 7 ], cotton [ 8 ], and soybean [ 9 , 10 ]. HT can change the epigenetic level of plants, including methylation [ 11 ] and microRNA (miRNA) [ 12 ], to achieve their response to HT stress.…”
MicroRNAs (miRNAs), a class of noncoding small RNAs (sRNAs), are widely involved in the response to high temperature (HT) stress at both the seedling and flowering stages. To dissect the roles of miRNAs in regulating male fertility in soybean cytoplasmic male sterility (CMS)-based F1 under HT, sRNA sequencing was performed using flower buds from HT-tolerant and HT-sensitive CMS-based F1 combinations (NF1 and YF1, respectively). A total of 554 known miRNAs, 59 new members of known miRNAs, 712 novel miRNAs, and 1145 target genes of 580 differentially expressed miRNAs (DEMs) were identified under normal temperature and HT conditions. Further integrated analysis of sRNA and transcriptome sequencing found that 21 DEMs and 15 differentially expressed target genes, such as gma-miR397a/Laccase 2, gma-miR399a/Inorganic phosphate transporter 1-4, and gma-miR4413a/PPR proteins, mitochondrial-like, were negatively regulated under HT stress. Furthermore, all members of the gma-miR156 family were suppressed by HT stress in both NF1 and YF1, but were highly expressed in YF1 under HT condition. The negative correlation between gma-miR156b and its target gene squamosa promoter-binding protein-like 2b was confirmed by expression analysis, and overexpression of gma-miR156b in Arabidopsis led to male sterility under HT stress. With these results, we proposed that miRNAs play an important role in the regulation of male fertility stability in soybean CMS-based F1 under HT stress.
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