Classification of ‘Nocardioides fulvus’ IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov.

Park, Yong Ha; Yoon, Jung Hoon; Shin, Yong Kook; Suzuki, Ken‐ichiro; Kudo, Takuji; Seino, Akio; Kim, Hong Joong; Lee, Jung Sook; Lee, Sung Taik

doi:10.1099/00207713-49-2-743

Cited by 88 publications

(63 citation statements)

References 31 publications

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“…Prauser (1976), O'Donnell et al (1982), Collins et al (1989), Miller et al (1991), Urzì et al (2000); Park et al (1999), Wang et al (2001) and Sohn et al (2003). ND, Not determined.…”

mentioning

confidence: 99%

“…Collins et al (1989 transferred the Pimelobacter species to the genera Terrabacter and Nocardioides. Currently, the family Nocardioidaceae comprises five genera: Nocardioides (Prauser, 1976), Aeromicrobium (Miller et al, 1991), Kribbella (Park et al, 1999;Sohn et al, 2003), Marmoricola (Urzì et al, 2000) and Actinopolymorpha (Wang et al, 2001). During a project to screen bioactive actinomycete strains from soils, one actinomycete strain, designated YIM 002 T , was isolated from a desert soil sample collected in Sunan county, Gansu Province, north-west China.…”

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confidence: 99%

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Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a desert soil in north-west China

Song

Wang

et al. 2005

International Journal of Systematic and Evolutionary Microbiology

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A novel actinomycete strain, designated YIM 002T, was isolated from a desert soil sample in Gansu Province, north-west China. This actinomycete isolate formed well-differentiated aerial and substrate mycelia. In the early stages of growth, the substrate mycelia fragmented into short or elongated rods. Chemotaxonomically, it contained ll-2,6-diaminopimelic acid in the cell wall. The cell-wall sugars contained ribose and glucose. Phospholipids present were phosphatidylinositol mannosides, phosphatidylinositol and diphosphatidylglycerol. MK-9(H4) was the predominant menaquinone. The major fatty acids were anteiso C15 : 0 (35·92 %), anteiso C17 : 0 (15·84 %), iso C15 : 0 (10·40 %), iso C16 : 0 (7·07 %) and C17 : 1 ω8c (9·37 %). The G+C content of the DNA was 70 mol%. Phylogenetic analysis and signature nucleotide data based on 16S rRNA gene sequences showed that strain YIM 002T is distinct from all recognized genera of the family Nocardioidaceae in the suborder Propionibacterineae. On the basis of the phenotypic and genotypic characteristics, it is proposed that isolate YIM 002T be classified as a novel species in a new genus, Jiangella gansuensis gen. nov., sp. nov. The type strain is YIM 002T (=DSM 44835T=CCTCC AA 204001T=KCTC 19044T).

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“…Prauser (1976), O'Donnell et al (1982), Collins et al (1989), Miller et al (1991), Urzì et al (2000); Park et al (1999), Wang et al (2001) and Sohn et al (2003). ND, Not determined.…”

mentioning

confidence: 99%

mentioning

confidence: 99%

Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a desert soil in north-west China

Song

Wang

et al. 2005

International Journal of Systematic and Evolutionary Microbiology

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“…The type strain is HKI 0478 T (5DSM 18824 T 5JCM 14599 T ). Park et al 1999 emend. Sohn et al 2003 is a member of the family Nocardioidaceae, which was proposed by Nesterenko et al (1985Nesterenko et al ( , 1990 and the description of which was emended by Rainey et al (in Stackebrandt et al, 1997).…”

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confidence: 99%

“…The genus Kribbella is represented by Gram-positive or Gram-variable, nonmotile actinomycetes that form an extensively branched vegetative mycelium and aerial hyphae that fragment into short to elongated rod-like or coccoid elements. Strains of the 11 Kribbella species with validly published names share the following chemotaxonomic characteristics (Park et al, 1999;Sohn et al, 2003): the presence of LL-diaminopimelic acid in the peptidoglycan (wall chemotype I sensu Lechevalier & Lechevalier, 1970), fatty acids that consist mainly of anteiso-and iso-branched components, MK-9(H 4 ) as the main menaquinone and polar lipids comprising phosphatidylcholine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol (phospholipid pattern III sensu Lechevalier et al, 1977). A combination of these chemotaxonomic markers serves to separate the strains of the genus Kribbella from members of the other genera within the family Nocardioidaceae.…”

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confidence: 99%

Kribbella aluminosa sp. nov., isolated from a medieval alum slate mine

Carlsohn

Groth

Spröer

et al. 2007

International Journal of Systematic and Evolutionary Microbiology

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Three actinomycetes (strains HKI 0478 T , HKI 0479 and HKI 0480) isolated from the surfaces of rocks in the Feengrotten medieval alum slate mine (Thuringia, Germany) were examined in a polyphasic taxonomic study. The following morphological and chemotaxonomic features supported their classification as members of the genus Kribbella: the presence of LLdiaminopimelic acid in the cell-wall peptidoglycan; glucose together with minor amounts of mannose and ribose as the whole-cell sugars; polar lipids comprising phosphatidylcholine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and unknown phospho-and glycolipids; fatty acid profiles characterized by the predominance of anteiso-C 15 : 0 , iso-C 16 : 0 and C 16 : 0 9-methyl; and the presence of MK-9(H 4 ) as the main menaquinone. The isolates had almost identical 16S rRNA gene sequences (99.9-100 %) and were most closely related to the type strains of Kribbella jejuensis (98.9 % sequence similarity), Kribbella swartbergensis and Kribbella solani (both 98.8 %). A wide range of genotypic and phenotypic markers as well as the low levels of DNA-DNA relatedness between strain HKI 0478 T and the type strains of K. jejuensis (41.3 %), K. swartbergensis (18.6 %) and K. solani (14.2 %) distinguished the novel strains from their closest phylogenetic neighbours. On the basis of these results, strain HKI 0478 T represents a novel member of the genus Kribbella, for which the name Kribbella aluminosa sp. nov. is proposed. The type strain is HKI 0478 T (5DSM 18824 T 5JCM 14599 T ). Park et al. 1999 emend. Sohn et al. 2003 is a member of the family Nocardioidaceae, which was proposed by Nesterenko et al. (1985Nesterenko et al. ( , 1990 and the description of which was emended by Rainey et al. (in Stackebrandt et al., 1997). The genus Kribbella is represented by Gram-positive or Gram-variable, nonmotile actinomycetes that form an extensively branched vegetative mycelium and aerial hyphae that fragment into short to elongated rod-like or coccoid elements. Strains of the 11 Kribbella species with validly published names share the following chemotaxonomic characteristics (Park et al., 1999;Sohn et al., 2003): the presence of LL-diaminopimelic acid in the peptidoglycan (wall chemotype I sensu Lechevalier & Lechevalier, 1970), fatty acids that consist mainly of anteiso-and iso-branched components, MK-9(H 4 ) as the main menaquinone and polar lipids comprising phosphatidylcholine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol (phospholipid pattern III sensu Lechevalier et al., 1977). A combination of these chemotaxonomic markers serves to separate the strains of the genus Kribbella from members of the other genera within the family Nocardioidaceae. The genus KribbellaThree filamentously growing actinomycetes, strains HKI 0478 T , HKI 0479 and HKI 0480, were isolated from acidic and heavy-metal-containing rock surfaces in a small mining area behind the 'Märchendom', the third level of the Feengrotten medieval alum slate mine (Saalfeld, Thuringia,...

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“…The genus Kribbella established by Park et al (1999) contains LL-diaminopimelic acid (LL-DAP) in its cell wall peptidoglycan and lies within the family Nocardioidaceae (Nesterenko et al, 1985(Nesterenko et al, , 1990. Two species, Kribbella flavida and Kribbella sandramycini, included in this genus were originally assigned to the genus Nocardioides ('Nocardioides fulvus' IFO 14399 and Nocardioides sp.…”

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confidence: 99%

Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated from potato tuber and soil in Jeju, Korea

Song

Kim

Hong

et al. 2004

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

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Two actinomycete strains, DSA1 T and HD9 T , were isolated from a potato tuber and soil from a potato-cultivating field in Jeju, Korea, respectively. A comprehensive 16S rDNA analysis revealed that the isolates belong to the genus Kribbella and share 97?7-98?6 % sequence similarity to Kribbella species. The strains also contained typical chemotaxonomic markers of the genus Kribbella: LL-diaminopimelic acid, alanine, glycine and glutamic acid in the cell wall peptidoglycan; mannose, glucose, galactose and ribose as whole cell sugars; diphosphatidylglycerol, phosphatidylcholine and phosphatidylinositol as characteristic phospholipids; and the major menaquinone MK-9 (H 4 ). DNA-DNA hybridization experiments showed that the isolates represented two distinct genomic species. A number of phenotypic properties can be used to differentiate the two isolates from Kribbella species. On the basis of polyphasic evidence, two novel species are proposed: Kribbella solani sp. nov. for strain DSA1 T (=KACC 20196 T =JCM 12205 T ) and Kribbella jejuensis sp. nov. for strain HD9 T (=KACC 20266 T =JCM 12204 T ).

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Classification of ‘Nocardioides fulvus’ IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov.

Cited by 88 publications

References 31 publications

Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a desert soil in north-west China

Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a desert soil in north-west China

Kribbella aluminosa sp. nov., isolated from a medieval alum slate mine

Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated from potato tuber and soil in Jeju, Korea

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