Binding of lectins to DNA micro-assemblies: Modification of nucleo-cages with lactose-conjugated psoralen

Kim, Kwonil; Matsuura, Kazunori; Kimizuka, Nobuo

doi:10.1016/j.bmc.2007.03.043

Cited by 23 publications

(10 citation statements)

References 47 publications

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“…(Steiner, et al, 2007) Amphiphilic cyclic disaccharide analogues TOF Two phosphodiester links, four lipophilic chains (Coppola, et al, 2007) TOF Biotinylated glyconanoparticles Reduction with poly(ethyleneglycol), and HAuCl 4 via a photochemical process gives biotinylated gold nanoparticles. (Miyagawa, et al, 2007) bis-(α , β-D-glucopyranosyl)-polyisobutylene To study self-association TOF (Orosz, et al, 2007) 1-Deoxygalactonojirimycinlysine hybrids As potent TOF D-galactosidase inhibitors (Steiner, et al, 2008a) Fused bicyclic thioglycosides of GlcNAc As mycothiol biosynthesis inhibitors TOF (Slättegård, et al, 2007) Galactosecyclohexenephosphonates TOF (3,5-DHB, ATT, To find competitive inhibitors of the trans-sialidase of the pathogen (Busse, et al, 2007) Poly 1,6-dithio-D (Lebedeva, et al, 2007) Synthesis by cross-metathesis reaction TOF Glycoporphyrins (da TOF Glyco nanoribbons Carbohydrate, PEG spacer and β-sheetforming peptide for self assembly (Lim, et al, 2007b) Lactose-conjugated psoralen TOF (CHCA) For preparation of spherical DNA microassemblies (Kim, et al, 2007e) N 4 -β-D-glycoside cytosines (Ali, et al, 2007) Click chemistry to obtain photosensitizers for cancer chemotherapy (Grin, et al, 2008) TOF (DHB) Salacinol analogues…”

Section: R-tof (Dhb)mentioning

confidence: 99%

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2007–2008

Harvey

2011

Mass Spectrometry Reviews

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This review is the fifth update of the original review, published in 1999, on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2008. The first section of the review covers fundamental studies, fragmentation of carbohydrate ions, use of derivatives and new software developments for analysis of carbohydrate spectra. Among newer areas of method development are glycan arrays, MALDI imaging and the use of ion mobility spectrometry. The second section of the review discusses applications of MALDI MS to the analysis of different types of carbohydrate. Specific compound classes that are covered include carbohydrate polymers from plants, N- and O-linked glycans from glycoproteins, biopharmaceuticals, glycated proteins, glycolipids, glycosides and various other natural products. There is a short section on the use of MALDI mass spectrometry for the study of enzymes involved in glycan processing and a section on the use of MALDI MS to monitor products of the chemical synthesis of carbohydrates with emphasis on carbohydrate-protein complexes and glycodendrimers. Corresponding analyses by electrospray ionization now appear to outnumber those performed by MALDI and the amount of literature makes a comprehensive review on this technique impractical. However, most of the work relating to sample preparation and glycan synthesis is equally relevant to electrospray and, consequently, those proposing analyses by electrospray should also find material in this review of interest.

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Section: R-tof (Dhb)mentioning

confidence: 99%

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2007–2008

Harvey

2011

Mass Spectrometry Reviews

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“…DNA can be used in nanotechnology for the creation of DNA origami . Matsuura et al conjugated well-defined glycopolymers with DNA and controlled the affinity using DNA technologies. , Glycopolymer conjugates with DNA were prepared having half-zip structures, which were incubated with a DNA platform to construct well-defined glycopolymer brushes, which showed strong interactions with lectins.…”

Section: Polymer Nanomedicine Using Glycopolymersmentioning

confidence: 99%

Glycopolymer Nanobiotechnology

2015

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“…The apparent affinity constant K af was reduced by 65% when the galactosyl residues were presented at 63 A ˚distance via complexes of oligonucleotide 18-mers, while 22-mer complexes showed minimal binding. The concept of self-organized glyco-clusters was recently extended to spherical DNA-assemblies 34 and applied to the multivalent display of mannose residues. 35 Fig.…”

Section: Oligonucleotides Attached To Saccharides and Small Moleculesmentioning

confidence: 99%

Controlling the activity of peptides and proteins with smart nucleic acid–protein hybrids

Röglin

Seitz

2008

Org. Biomol. Chem.

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Oligonucleotide-peptide conjugates have frequently been used to control the localisation of the conjugate molecule. For example, the oligonucleotide segment has allowed spatially addressed immobilization of peptides and proteins on DNA-arrays via hybridisation while the peptide part has most frequently been used to confer transfer of oligonucleotide cargo into live cells. The regulation of functional properties such as the affinity of these bioconjugates for protein targets has rarely been addressed. This review article describes the current developments in the application of smart oligonucleotide-peptide hybrids. The mutual recognition between nucleic acid segments is used to constrain the structure or control the distance between peptide and protein segments. Application of these new type of oligonucleotide-peptide hybrids allowed not only the regulation of binding affinity of peptide ligands but also control of enzymatic and optical activity of proteins.

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Binding of lectins to DNA micro-assemblies: Modification of nucleo-cages with lactose-conjugated psoralen

Cited by 23 publications

References 47 publications

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2007–2008

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2007–2008

Glycopolymer Nanobiotechnology

Controlling the activity of peptides and proteins with smart nucleic acid–protein hybrids

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