“…For 3D fluorescence imaging, after rinsing with PBS, the fixed samples were cleared using tetraethylene glycol dimethacrylate-crosslinked 2-methacryloyloxyethyl phosphorylcholine polymer hydrogel, as described previously. 12 The cleared tissues were incubated with propidium iodide (PI) (Thermo Fisher Scientific, Tokyo, Japan) to visualize cell nuclei and the following Abs: rabbit anti-mouse CD11c monoclonal Ab (mAb) (clone EPR21826, Abcam, Cambridge, UK, Cat# ab219799, RRID:AB_2864725) to detect DCs, rabbit anti-human Granzyme B Ab (Abcam, Cat# ab4059, RRID:AB_304251) to detect killer cells, rabbit anti-mouse CD4 mAb (clone CAL4, Abcam, Cat# 237722) to detect helper T cells, rat anti-mouse FoxP3 mAb (clone FJK-16s, Thermo Fisher Scientific, San Diego, CA, USA, Cat# 14-5773-80, RRID:AB_467575) to detect regulatory T cells (Tregs), rat anti-mouse programmed death-1 (PD-1) mAb (clone RMP1-14, Leinco Technologies, St. Louis, USA, Cat# P362, RRID:AB_2737557), and rabbit anti-human programmed death ligand-1 (PDL-1) Ab (Proteintech, Cat# 17952-1-AP, RRID:AB_10597552) to detect immune checkpoint molecule-expressing cells. Ab-incubated products were visualized using fluorescein isothiocyanate-labeled F(ab')2-Goat anti-rabbit IgG (H+L) Ab (Invitrogen) or Alexa Fluor 647-labeled goat anti-rat IgG (H+L) Ab (Invitrogen).…”