A review on genome mapping of penaeid shrimps of commercial importance

Harke, Sanjay; Panche, Archana N

doi:10.1111/are.13751

Cited by 4 publications

(3 citation statements)

References 104 publications

(243 reference statements)

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“…The indispensable tools for DNA manipulation in the field of molecular biology, REases, find utility in various domains including recombinant DNA technology, [ 19 ] DNA sequence analysis, [ 20,21 ] and genome mapping. [ 22 ] These enzymes are found in bacteria and are part of RM system. [ 23 ] Considering factors such as their structural intricacy and cofactor requirements, the RM system can be categorized into four distinct classes.…”

Section: Early Genome Editing and The Rm Immune Systemmentioning

confidence: 99%

The immune system of prokaryotes: potential applications and implications for gene editing

Liu,

Wang

et al. 2024

Biotechnology Journal

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Gene therapy has revolutionized the treatment of genetic diseases. Spearheading this revolution are sophisticated genome editing methods such as TALENs, ZFNs, and CRISPR‐Cas, which trace their origins back to prokaryotic immune systems. Prokaryotes have developed various antiviral defense systems to combat viral attacks and the invasion of genetic elements. The comprehension of these defense mechanisms has paved the way for the development of indispensable tools in molecular biology. Among them, restriction endonuclease originates from the innate immune system of bacteria. The CRISPR‐Cas system, a widely applied genome editing technology, is derived from the prokaryotic adaptive immune system. Single‐base editing is a precise editing tool based on CRISPR‐Cas system that involves deamination of target base. It is worth noting that prokaryotes possess deamination enzymes as part of their defense arsenal over foreign genetic material. Furthermore, prokaryotic Argonauts (pAgo) proteins, also function in anti‐phage defense, play an important role in complementing the CRISPR‐Cas system by addressing certain limitations it may have. Recent studies have also shed light on the significance of Retron, a reverse transcription transposon previously showed potential in genome editing, has also come to light in the realm of prokaryotic immunity. These noteworthy findings highlight the importance of studying prokaryotic immune system for advancing genome editing techniques. Here, both the origin of prokaryotic immunity underlying aforementioned genome editing tools, and potential applications of deaminase, pAgo protein and reverse transcriptase in genome editing among prokaryotes were introduced, thus emphasizing the fundamental mechanism and significance of prokaryotic immunity.

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Section: Early Genome Editing and The Rm Immune Systemmentioning

confidence: 99%

The immune system of prokaryotes: potential applications and implications for gene editing

Liu,

Wang

et al. 2024

Biotechnology Journal

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“…These techniques are time consuming, with high cost/effort per return of polymorphisms, and show back mutation cases. The availability of high-density maps and genomewide coverage of aquaculture models is insufficient to supply information for improvement programs (Maqsood and Ahmad, 2017;Liu and Cordes, 2004;Diwan et al, 2018). However, the complete mitochondrial information of decapod crustaceans would provide a genomic resource for mitogenomic phylogeny, comparative gene arrangement and annotation (Zhong et al, 2018;Shen et al, 2007; Table 1).…”

Section: In Vitro Fertilizationmentioning

confidence: 99%

“…Nowadays, genomic information usable to design a genetic map is based on the following approaches: single nucleotide polymorphism (SNP) genotyping, RNA-Seq technology based on next-generation DNA sequencing platform, DNA microarrays and restriction site-associated DNA sequencing (RAD-seq). Diwan et al (2018) reviewed the status of genome mapping of penaeid shrimps through conventional molecular markers and NGS-based genotyping methods for improving the quantity and quality of animals with genetically superior traits for aquaculture through selective breeding. In this review the authors describe the findings about construction of integrated genetic linkage maps for breeding the following species: L. vannamei based on SNP technique (Zhi-Qiang et al, 2009;Yu et al, 2017a), transcriptome analysis by RNA-sequencing technology (Yu et al, 2014), and RAD sequencing (Yu et al, 2015).…”

Section: In Vitro Fertilizationmentioning

confidence: 99%

Research frontiers in penaeid shrimp reproduction: Future trends to improve commercial production

2019

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Shrimp farming worldwide is based on a similar technological package, characterized by three phases: Controlled Reproduction, Larvae Culture, and Grow-out Culture. This basic aquaculture package uses broodstock animals, with different levels of fundamental genetic selection, induced to mature and reproduce based on unilateral eyestalk ablation. This review identified ten reproduction-related research subjects that can improve the shrimp industry based on basic scientific knowledge and four levels of application: eyestalk ablation alternatives, larvae production, product protection, and grow-out yield improvement. Species-specificity must be considered in developing biotechnology solutions. Alternatives to eyestalk ablation for controlling ovarian maturation are based on neurotransmitter regulation in Litopenaeus; however, the environmental impact of this approach has to be evaluated. Maturation by RNAi requires further evaluation, and maturation pheromones have not been explored. Sex reversal, hybridization, in vitro fertilization, and seedstock cryopreservation of penaeids require fundamental research. Triploid culture and genetic selection can be applied to some species for product protection; however, for L. vannamei, triploidization is not practical yet.

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Single nucleotide polymorphism associated with disease resistance in Penaeus vannamei

Mangabeira-Silva

Soares

Lanza

2020

Journal of Invertebrate Pathology

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A review on genome mapping of penaeid shrimps of commercial importance

Cited by 4 publications

References 104 publications

The immune system of prokaryotes: potential applications and implications for gene editing

The immune system of prokaryotes: potential applications and implications for gene editing

Research frontiers in penaeid shrimp reproduction: Future trends to improve commercial production

Single nucleotide polymorphism associated with disease resistance in Penaeus vannamei

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