Background Elucidating the candidate genes and key metabolites responsible for pulp and peel coloration is essential for breeding pitaya fruit with new and improved appeal and high nutritional value. Here, we used transcriptome (RNA-Seq) and metabolome analysis (UPLC-MS/MS) to identify structural and regulatory genes and key metabolites associated with peel and pulp colors in three pitaya fruit types belonging to two different Hylocereus species. Result Our combined transcriptome and metabolome analyses suggest that the main strategy for obtaining red color is to increase tyrosine content for downstream steps in the betalain pathway. The upregulation of CYP76ADs is proposed as the color-breaking step leading to red or colorless pulp under the regulation by WRKY44 transcription factor. Supported by the differential accumulation of anthocyanin metabolites in red pulped pitaya fruit, our results showed the regulation of anthocyanin biosynthesis pathway in addition to betalain biosynthesis. However, no color-breaking step for the development of anthocyanins in red pulp was observed and no biosynthesis of anthocyanins in white pulp was found. Together, we propose that red pitaya pulp color is under the strict regulation of CYP76ADs by WRKYs and the anthocyanin coexistence with betalains is unneglectable. We ruled out the possibility of yellow peel color formation due to anthocyanins because of no differential regulation of chalcone synthase genes between yellow and green and no detection of naringenin chalcone in the metabolome. Similarly, the no differential regulation of key genes in the carotenoid pathway controlling yellow pigments proposed that the carotenoid pathway is not involved in yellow peel color formation. Conclusions Together, our results propose several candidate genes and metabolites controlling a single horticultural attribute i.e. color formation for further functional characterization. This study presents useful genomic resources and information for breeding pitaya fruit with commercially attractive peel and pulp colors. These findings will greatly complement the existing knowledge on the biosynthesis of natural pigments for their applications in food and health industry.

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Soil degradation due to global warming, water scarcity and diminishing natural resources negatively impacts food security. Soil fertility deterioration, particularly phosphorus (P) deficiency, remains a challenge in the arid and semi-arid regions. In this study, field experiments were conducted in different geographical locations to investigate the effects of organic amendments coupled with P fertilization and irrigation on soil physical-chemical properties, and the growth, yield and quality of wheat. Application of P fertilizers combined with organic amendments mitigated soil salinity, increased organic matter content, available water, hydraulic conductivity and available macronutrients, but decreased soil bulk density. Application of organic amendments slightly increased total Cd, Ni and Pb in soil, but Cd and Ni concentration was below allowable limits whilst Pb reached a hazardous level. Soil P fractions were significantly increased with the combined application of mineral P and organic amendments irrespective of salinity and irrigation. Crop growth yield and quality of wheat improved significantly in response to the integrated application of mineral P and organic amendments. In conclusion, the combination of mineral P sources with organic amendments could be successfully used as a costeffective management practice to enhance soil fertility and crop production in the arid and semi-arid regions stressed with water scarcity and natural resource constraints. Saline soils are an important natural resource but the area of degraded saline soils worldwide has rapidly increased due to climate change and limited rainfall, which poses a great challenge to global food security 1,2. This problem may be solved through a targeted remediation program of such soils. Deficit irrigation (DI) is also projected to increase soil salinity and sodicity, particularly in the arid and semi-arid climatic regions 3 , requiring proper management strategies to alleviate soil degradation. Contamination of soils with heavy metals has become a global concern, due to potential hazardous impacts of these elements on soil quality, crop yield and quality 4 , and food safety and human health 5. Application of organic amendments was reported to remediate saline soils, alleviate salinity and sodicity stress on crops 6 , and reduce toxicity of heavy metals 4. Some organic amendments contain heavy metals, and their application benefits require further studies 7. Organic amendments could improve soil properties by accelerating leaching of sodium and other salts and reducing exchangeable sodium percentage (ESP) 8. Moreover, organic amendments enhance soil biological and enzyme activities and increase organism

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Soil amendments may increase the slate tolerance of plants consequently; it may increase the opportunity of using saline water in agricultural production. In the present pot trial, the effects of biochar (BIC) and compost (COM) on roselle (Hibiscus sabdariffa L.) irrigated with saline water (EC = 7.50 dS m−1) was studied. Roselle plants were amended with biochar (BIC1 and BIC2) or compost (COM1 and COM2) at rates of 1 and 2% (w/w), as well as by a mixture of the two amendments (BIC1+). The experiment included a control soil without any amendments. Biochar and compost significantly enhanced the soil quality and nutrients availability under saline irrigation. Compost and biochar improved the degree of soil aggregation, total soil porosity and soil microbial biomass. BIC1 + COM1 increased the soil microbial biomass carbon and nitrogen over the individual application of each amendments and control soil. BIC1 + COM1 increased the activity of dehydrogenase and phosphatase enzymes. Growth of roselle plants including: plant height, shoot fresh and dry weight, and chlorophyll were significantly responded to the added amendments. The maximum sepal’s yield was achieved from the combined application of compost and biochar. All the investigated treatments caused remarkable increases in the total flavonol and anthocyanin. BIC1 + COM1 increased the total anthocyanin and flavonol by 29 and 17% above the control. Despite the notable improvement in soil and roselle quality as a result of the single addition of compost or biochar, there is a clear superiority due to mixing the two amendments. It can be concluded that mixing of biochar and compost is recommended for roselle plants irrigated with saline water.

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