Cancer diagnosis is one of the most important tasks of biomedical research and has become the main objective of medical investigations.
The present paper proposed an analytical strategy for distinguishing between normal and malignant colorectal tissues
by combining the use of near-infrared (NIR) spectroscopy with chemometrics. The successive projection algorithm-linear discriminant analysis
(SPA-LDA) was used to seek a reduced subset of variables/wavenumbers and build a diagnostic model of LDA. For comparison, the partial least
squares-discriminant analysis (PLS-DA) based on full-spectrum classification was also used as the reference. Principal component analysis (PCA)
was used for a preliminary analysis. A total of 186 spectra from 20 patients with partial colorectal resection were collected and divided into three subsets for training,
optimizing, and testing the model. The results showed that, compared to PLS-DA, SPA-LDA provided more parsimonious model using only three
wavenumbers/variables (4065, 4173, and 5758 cm−1) to achieve the sensitivity of 84.6%, 92.3%, and 92.3%
for the training, validation, and test sets, respectively, and the specificity of 100% for each subset. It indicated that the combination of
NIR spectroscopy and SPA-LDA algorithm can serve as a potential tool for distinguishing between normal and malignant colorectal tissues.
Black rice is an important rice species in Southeast Asia. It is a common phenomenon to pass low-priced black rice off as high-priced ones for economic benefit, especially in some remote towns. There is increasing need for the development of fast, easy-to-use, and low-cost analytical methods for authenticity detection. The feasibility to utilize near-infrared (NIR) spectroscopy and support vector data description (SVDD) for such a goal is explored. Principal component analysis (PCA) is used for exploratory analysis and feature extraction. Another two data description methods, i.e., k-nearest neighbor data description (KNNDD) and GAUSS method, are used as the reference. A total of 142 samples from three brands were collected for spectral analysis. Each time, the samples of a brand serve as the target class whereas other samples serve as the outlier class. Based on both the first two principal components (PCs) and original variables, three types of data descriptions were constructed. On average, the optimized SVDD model achieves acceptable performance, i.e., a specificity of 100% and a sensitivity of 94.2% on the independent test set with tight boundary. It indicates that SVDD combined with NIR is feasible and effective for authenticity detection of black rice.
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