Mitogen-activated protein kinase (MAPK) cascades are highly conserved signaling modules in eukaryotes, including yeasts, plants and animals. MAPK cascades are responsible for protein phosphorylation during signal transduction events, and typically consist of three protein kinases: MAPK, MAPK kinase, and MAPK kinase kinase. In this current study, we identified a total of 12 FvMAPK, 7 FvMAPKK, 73 FvMAPKKK, and one FvMAPKKKK genes in the recently published Fragaria vesca genome sequence. This work reported the classification, annotation and phylogenetic evaluation of these genes and an assessment of conserved motifs and the expression profiling of members of the gene family were also analyzed here. The expression profiles of the MAPK and MAPKK genes in different organs and fruit developmental stages were further investigated using quantitative real-time reverse transcription PCR (qRT-PCR). Finally, the MAPK and MAPKK expression patterns in response to hormone and abiotic stresses (salt, drought, and high and low temperature) were investigated in fruit and leaves of F. vesca. The results provide a platform for further characterization of the physiological and biochemical functions of MAPK cascades in strawberry.
MicroRNAs (miRNAs) are class of noncoding RNAs that regulate gene expression at the post-transcriptional level, either by endonucleolytic cleavage or by translational inhibition. Strawberry is a popular worldwide fresh fruit and is believed to benefit human health. However, the function of miRNAs during this fruit development and ripening remains unknown and miRNAs for specific for these processes are expected to be discovered. In the study, we identified 218 conserved miRNAs and 87 novel miRNAs in <em>Fragaria vesca</em>. Expression profiling of miRNAs during fruit development and ripening was performed, and the expression of targets of the miRNAs was validated by qRT-PCR (quantitative reverse transcription polymerase chain reaction). This study provided data for further research on molecular mechanisms involved in fruit development and ripening.
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