QPACE is a novel massively parallel architecture optimized for lattice QCD simulations. A single QPACE node is based on the IBM PowerXCell 8i processor. The nodes are interconnected by a custom 3-dimensional torus network implemented on an FPGA. The compute power of the processor is provided by 8 Synergistic Processing Units. Making efficient use of these accelerator cores in scientific applications is challenging. In this paper we describe our strategies for porting applications to the QPACE architecture and report on performance numbers.
Fundamental understanding of the impact of reservoir potentials on the analyte behavior on the microfluidic chips is an important issue in microchip electrophoresis (MCE) for suitable injection and separation of analytes, since the applied potentials may significantly affect the shape of sample plug, sample leakage from the injection channel to the separation channel, injected sample amount, and separation efficiency. This study addressed this issue for the case of a conventional cross-geometry microchip with four reservoirs using computer simulations, the results of which were verified by the analysis of DNA fragments. For the microchip with a definite structure and migration distance, the injected sample amount was shown to be the vital parameter for improving the limit of detection and resolution. During injection, the shape of the sample plug could be adjusted by varying the reservoir potentials. It was demonstrated that a "magnified injection" (applying high voltage on the three reservoirs to the sample reservoir) is useful to enhance the detection sensitivity depending on the analyte composition, although such injection was previously avoided because of introducing too large amounts of the analyte in comparison with two established modes, floating and pinched injection. Optimal magnified injection was proved to improve the sensitivity for about 4 times over that of pinched injection for the analysis of DNA step ladders using microchip gel electrophoresis (MCGE). Sample leakage of DNA fragments could be suppressed by applying a high positive voltage on injection channel during separation, but the voltage degraded the injected amount and resolution.
We calculate non-perturbative renormalization factors at hadronic scale for ∆S = 2 four-quark operators in quenched domain-wall QCD using the Schrödinger functional method. Combining them with the non-perturbative renormalization group running by the Alpha collaboration, our result yields the fully non-perturbative renormalization factor, which converts the lattice bare B K to the renormalization group invariant (RGI) B K . Applying this to the bare B K previously obtained by the CP-PACS collaboration at a −1 ≃ 2, 3, 4 GeV, we obtain B K = 0.782(5)(7) (equivalent to B MS K (NDR, 2GeV) = 0.565(4)(5) by 2-loop running) in the continuum limit, where the first error is statistical and the second is systematic due to the continuum extrapolation. Except the quenching error, the total error we have achieved is less than 2%, which is much smaller than the previous ones. Taking the same procedure, we obtain m
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