Although arthropods are important viral vectors, the biodiversity of arthropod viruses, as well as the role that arthropods have played in viral origins and evolution, is unclear. Through RNA sequencing of 70 arthropod species we discovered 112 novel viruses that appear to be ancestral to much of the documented genetic diversity of negative-sense RNA viruses, a number of which are also present as endogenous genomic copies. With this greatly enriched diversity we revealed that arthropods contain viruses that fall basal to major virus groups, including the vertebrate-specific arenaviruses, filoviruses, hantaviruses, influenza viruses, lyssaviruses, and paramyxoviruses. We similarly documented a remarkable diversity of genome structures in arthropod viruses, including a putative circular form, that sheds new light on the evolution of genome organization. Hence, arthropods are a major reservoir of viral genetic diversity and have likely been central to viral evolution.DOI: http://dx.doi.org/10.7554/eLife.05378.001

Although segmented and unsegmented RNA viruses are commonplace, the evolutionary links between these two very different forms of genome organization are unclear. We report the discovery and characterization of a tick-borne virus-Jingmen tick virus (JMTV)-that reveals an unexpected connection between segmented and unsegmented RNA viruses. The JMTV genome comprises four segments, two of which are related to the nonstructural protein genes of the genus Flavivirus (family Flaviviridae), whereas the remaining segments are unique to this virus, have no known homologs, and contain a number of features indicative of structural protein genes. Remarkably, homology searching revealed that sequences related to JMTV were present in the cDNA library from Toxocara canis (dog roundworm; Nematoda), and that shared strong sequence and structural resemblances. Epidemiological studies showed that JMTV is distributed in tick populations across China, especially Rhipicephalus and Haemaphysalis spp., and experiences frequent host-switching and genomic reassortment. To our knowledge, JMTV is the first example of a segmented RNA virus with a genome derived in part from unsegmented viral ancestors.evolution | segmentation S egmentation is a common form of genome organization in RNA viruses, although why it has evolved more than once and is maintained in such a diverse array of viruses, including those with both positive-and negative-sense genomes, are unclear (1). Segmented and unsegmented viruses usually belong to different viral families, such that the sequence divergence between them is often too great for any meaningful evolutionary inference. The only example of "recent" genome fragmentation in a single RNA molecule occurred in a laboratory strain of foot-and-mouth disease virus (2, 3), although that this occurred following extensive propagation in cell culture means that its relationship to segmentation in nature is uncertain. Hence, the evolutionary links between unsegmented and segmented viruses, as well as the mechanisms that underpin their genesis, are poorly understood.The Flaviviridae are a family of unsegmented positive sense RNA viruses that infect vertebrate and invertebrate species, including the important human pathogens dengue virus, yellow fever virus, and hepatitis C virus. Despite the substantial sequence divergence between the Flavivirus, Pestivirus, and Hepacivirus genera that make up the Flaviviridae, they exhibit a similar genomic structure characterized by a single ORF with distinct clusters of structural and nonstructural genes. The ORF is translated into a single polyprotein, which is subsequently cleaved by cellular and viral proteases into structural and nonstructural proteins. Among the nonstructural protein products, NS3 and NS5 possess the enzymatic domains essential for RNA capping and genome replication (4), whereas the NS3 and NS2b proteins form a two-component serine protease involved in posttranslational cleavage of the viral polyprotein (5).Herein we describe the discovery and characterization of an...

A novel tick-borne bunyavirus (Huaiyangshan virus, HYSV), which causes haemorrhagic fever-like disease, has recently been reported in China. So far no animal experiments have been performed to study its pathogenesis. Towards developing an animal model for HYSV fever, newborn and adult mice and rats and golden hamsters were inoculated intracerebrally or intraperitoneally with HYSV. Newborn rats and newborn mice, especially Kunming (KM) mice, appeared highly susceptible. Remarkably, the KM mice that died of the HYSV infection developed large necrotic areas in the liver, while no obvious pathological changes were observed within the other organs. PCR and immunohistochemical analyses of the post-mortem material detected both HYSV antigen and RNA in almost all organs, indicating a systemic infection. Our data demonstrate that HYSV can cause a lethal infection of both newborn mice and newborn rats with apparent pathological damage of the liver. This animal model may help to understand the pathogenesis of the HYSV infection in humans.Viruses of the family Bunyaviridae, which are geographically distributed worldwide, can be classed into five genera: Orthobunyavirus, Hantavirus, Phlebovirus, Nairovirus and Tospovirus (Nichol, 2001;. With the exception of hantaviruses which are hosted and transmitted by mammals (rodents and insectivores) (Jonsson et al., 2010;, all four other genera of viruses are transmitted by arthropods, such as mosquitoes, ticks, sand flies, or thrips (Nichol, 2001;. Among the known viruses, viruses from genera Orthobunyavirus, Hantavirus, Phlebovirus and Nairovirus, can cause human disease, varying from inapparent or mild febrile disease (orthobunyaviruses) to fatal encephalitis, haemorrhagic fever with renal syndrome and hantavirus pulmonary syndrome (hantaviruses), a selflimiting influenza-like illness (mostly) to haemorrhagic fever (rarely) (phleboviruses) and Crimean-Congo hemorrhagic fever (CCHF) (nairoviruses) (Nichol, 2001;.In 2009 and 2010, a haemorrhagic fever-like disease with 15 % mortality emerged in the neighbouring mountain areas of Henan and Hubei provinces, which are located in the central part of China Zhang et al., 2011Zhang et al., , 2012. The illness was characterized by fever, severe malaise, nausea, vomiting and diarrhoea, with haemorrhagic complications in some cases (Zhang et al., , 2012. Yu et al. (2011) reported the disease as severe fever with thrombocytopenia syndrome and the virus as severe fever with thrombocytopenia syndrome virus. As thrombocytopenia is a major feature in nearly all haemorrhagic fever diseases caused by viruses or even by other pathogens such as Rickettsia spp. and Anaplasma phagocytophilum (Sanchez et al., 2004;Srikiatkhachorn et al., 2010;Zhang et al., 2008), we proposed to name the syndrome as Huaiyangshan haemorrhagic fever (HYSHF) and the virus as Huaiyangshan virus (HYSV) according to the geographical origin of the initially reported patients . In 2010, the disease was also found in nine other provinces. In 2011, more than 500 HYSHF cases from th...

No abstract

Hepatitis E virus (HEV) is a zoonotic pathogen of which several species of animal were reported as reservoirs. Swine stands out as the major reservoir for HEV infection in humans, as suggested by the close genetic relationship of swine and human virus. Since 2000, Genotype 4 HEV has become the dominant cause of hepatitis E disease in China. Recent reports showed that genotype 4 HEV is freely transmitted between humans and swine in eastern and southern China. However, the infection status of HEV in human and swine populations in central China is still unclear. This study was conducted in a rural area of central China, where there are many commercial swine farms. A total of 1476 serum and 554 fecal specimens were collected from the general human and swine populations in this area, respectively. The seroepidemiological study was conducted by enzyme-linked immunosorbent assay. Conserved genomic sequences of open reading frame 2 were detected using reverse transcription-PCR. The results indicated that the overall viral burden of the general human subjects was 0.95% (14/1476), while 7.0% (39/554) of the swine excreted HEV in stool. The positive rate of anti-HEV IgG and IgM in the serum samples was 7.9% (117/1476) and 1.6% (24/1476), respectively. Phylogenetic analysis based on the 150 nt partial sequence of the capsid protein gene showed that the 53 swine and human HEV isolates in the current study all belonged to genotype 4, clustering into three major groups. However, the HEV isolates prevalent in the human and swine populations were classified into known distinct subgenotypes, which suggested that no cross-species transmission between swine and humans had taken place in this area. This result was confirmed by cloning and phylogenetic analysis of the complete capsid protein gene sequence of three representative HEV strains in the three major groups. The cross reactivity between anti-HEV IgG from human sera and the two representative strains from swine in central China was confirmed by Dot-blot assay. In conclusion, although all the HEV strains prevalent in central China belonged to genotype 4, there is no evidence of cross-species transmission between human and swine in this area.