This study contributes to the sustained effort to unravel the chemical structure of graphite oxide (GO) by proposing a model based on elemental analysis, transmission electron microscopy, X-ray diffraction, 13C magic-angle spinning NMR, diffuse reflectance infrared Fourier transform spectroscopy, X-ray photoelectron spectroscopy, and electron spin resonance investigations. The model exhibits a carbon network consisting of two kinds of regions (of trans linked cyclohexane chairs and ribbons of flat hexagons with CC double bonds) and functional groups such as tertiary OH, 1,3-ether, ketone, quinone, and phenol (aromatic diol). The latter species give clear explanation for the observed planar acidity of GO, which could not be interpreted by the previous models. The above methods also confirmed the evolution of the surface functional groups upon successive oxidation steps.

Iron/sulfur (Fe/S) proteins are central to the functioning of cells in both prokaryotes and eukaryotes. Here, we show that the yhgI gene, which we renamed nfuA, encodes a two-domain protein that is required for Fe/S biogenesis in Escherichia coli. The N-terminal domain resembles the so-called Fe/S A-type scaffold but, curiously, has lost the functionally important Cys residues. The C-terminal domain shares sequence identity with Nfu proteins. Mössbauer and UV-visible spectroscopic analyses revealed that, upon reconstitution, NfuA binds a [4Fe-4S] cluster. Moreover, NfuA can transfer this cluster to apo-aconitase. Mutagenesis studies indicated that the N-and C-terminal domains are important for NfuA function in vivo. Similarly, the functional importance of Cys residues present in the Nfu-like domain was demonstrated in vivo by introducing Cys3 Ser mutations. In vivo investigations revealed that the nfuA gene is important for E. coli to sustain oxidative stress and iron starvation. Also, combining nfuA with either isc or suf mutations led to additive phenotypic deficiencies, indicating that NfuA is a bona fide new player in Isc-and Suf-dependent Fe/S biogenesis pathways. Taken together, these data demonstrate that NfuA intervenes in the maturation of apoproteins in E. coli, allowing them to acquire Fe/S clusters. By taking into account results from numerous previous transcriptomic studies that had suggested a link between NfuA and protein misfolding, we discuss the possibility that NfuA could act as a scaffold/chaperone for damaged Fe/S proteins.

A Cu(I) catalyst (1), supported by a framework of strongly basic guanidinato moieties, mediates nitrene-transfer from PhI═NR sources to a wide variety of aliphatic hydrocarbons (C-H amination or amidination in the presence of nitriles) and olefins (aziridination). Product profiles are consistent with a stepwise rather than concerted C-N bond formation. Mechanistic investigations with the aid of Hammett plots, kinetic isotope effects, labeled stereochemical probes, and radical traps and clocks allow us to conclude that carboradical intermediates play a major role and are generated by hydrogen-atom abstraction from substrate C-H bonds or initial nitrene-addition to one of the olefinic carbons. Subsequent processes include solvent-caged radical recombination to afford the major amination and aziridination products but also one-electron oxidation of diffusively free carboradicals to generate amidination products due to carbocation participation. Analyses of metal- and ligand-centered events by variable temperature electrospray mass spectrometry, cyclic voltammetry, and electron paramagnetic resonance spectroscopy, coupled with computational studies, indicate that an active, but still elusive, copper-nitrene (S = 1) intermediate initially abstracts a hydrogen atom from, or adds nitrene to, C-H and C═C bonds, respectively, followed by a spin flip and radical rebound to afford intra- and intermolecular C-N containing products.

Biotin synthase and lipoate synthase are homodimers that are required for the C-S bond formation at nonactivated carbon in the biosynthesis of biotin and lipoic acid, respectively. Aerobically isolated monomers were previously shown to contain a (2Fe-2S) cluster, however, after incubation with dithionite one (4Fe-4S) cluster per dimer was obtained, suggesting that two (2Fe-2S) clusters had combined at the interface of the subunits to form the (4Fe-4S) cluster. Here we report Mössbauer studies of (57)Fe-reconstituted biotin synthase showing that anaerobically prepared enzyme can accommodate two (4Fe-4S) clusters per dimer. The (4Fe-4S) cluster is quantitatively converted into a (2Fe-2S)(2+) cluster upon exposure to air. Reduction of the air-exposed enzyme with dithionite or photoreduced deazaflavin yields again (4Fe-4S) clusters. The (4Fe-4S) cluster is stable in both the 2+ and 1+ oxidation states. The Mössbauer and EPR parameters were DeltaE(q) = 1.13 mm/s and delta = 0.44 mm/s for the diamagnetic (4Fe-4S)(2+) and DeltaE(q) = 0.51 mm/s, delta = 0.85 mm/s, g(par) = 2.035, and g(perp) = 1.93 for the S = (1)/(2) state of (4Fe-4S)(1+). Considering that we find two (4Fe-4S) clusters per dimer, our studies argue against the early proposal that the enzyme contains one (4Fe-4S) cluster bridging the two subunits. Our study of lipoate synthase gave results similar to those obtained for BS: under strict anaerobiosis, lipoate synthase can accommodate a (4Fe-4S) cluster per subunit [DeltaE(q) = 1.20 mm/s and delta = 0.44 mm/s for the diamagnetic (4Fe-4S)(2+) and g(par) = 2.039 and g(perp) = 1.93 for the S = (1)/(2) state of (4Fe-4S)(1+)], which reacts with oxygen to generate a (2Fe-2S)(2+) center.

IscA/SufA proteins belong to complex protein machineries which are involved in iron-sulfur cluster biosynthesis. They are defined as scaffold proteins from which preassembled clusters are transferred to target apoproteins. The experiments described here demonstrate that the transfer reaction proceeds in two observable steps: a first fast one leading to a protein-protein complex between the cluster donor (SufA/IscA) and the acceptor (biotin synthase), and a slow one consisting of cluster transfer leading to the apoform of the scaffold protein and the holoform of the target protein. Mutation of cysteines in the acceptor protein specifically inhibits the second step of the reaction, showing that these cysteines are involved in the cluster transfer mechanism but not in complex formation. No cluster transfer from IscA to IscU, another scaffold of the isc operon, could be observed, whereas IscU was shown to be an efficient cluster source for cluster assembly in IscA. Implications of these results are discussed.

The biogenesis of iron-sulfur [Fe-S] clusters requires the coordinated delivery of both iron and sulfide. Sulfide is provided by cysteine desulfurases that use L-cysteine as sulfur source. So far, the physiological iron donor has not been clearly identified. CyaY, the bacterial ortholog of frataxin, an iron binding protein thought to be involved in iron-sulfur cluster formation in eukaryotes, is a good candidate because it was shown to bind iron. Iron-sulfur [Fe-S] clusters are ubiquitous and evolutionary ancient prosthetic groups that are required to sustain fundamental life processes. They are involved in electron transfer, substrate binding/activation, iron/sulfur storage, regulation of gene expression, and enzyme activity reactions (1). Formation of intracellular [Fe-S] clusters does not occur spontaneously but requires a complex biosynthetic machinery. In Escherichia coli three different types of [Fe-S] cluster biosynthesis systems have been identified so far, namely the iron-sulfur cluster, sulfur mobilization, and cysteine sulfinate desulfinase systems (2, 3). These different machineries have in common the involvement of a cysteine desulfurase that allows utilization of cysteine as source of sulfur atoms Important questions related to [Fe-S] cluster biosynthesis include: (i) the molecular mechanism by which iron and sulfide are assembled on the scaffold protein; (ii) how accessory proteins (chaperones in particular) participate in the process; and (iii) how the cluster is transferred from the scaffold to an apo target protein. Another essential question is the identity of iron and sulfur donors for the formation of [Fe-S] clusters. Whereas L-cysteine has been identified as the ultimate source of sulfur, the question "Where does the iron come from?" still remains unanswered. Whereas some preliminary answers have been provided to most of the above issues, very little is known regarding the last question. It is simply assumed that, because of its toxicity, iron has to be stored and transported by proteins from which it can be mobilized for assembly of iron sites. In bacteria, IscA and YggX, which were shown to be able to bind iron and to be, to some extent, involved in [Fe-S] metabolism, are potential candidates requiring further investigations (9 -12). However, this is controversial because IscA was proposed to be an [Fe-S] scaffold protein (5, 7), whereas a recent report could not establish iron binding to YggX (13).More information concerning a putative iron donor protein is available in eukaryotic systems. In eukaryotes, [Fe-S] cluster assembly requires two biosynthetic protein machineries. One is localized in the mitochondria and functions in the assembly of all cellular [Fe-S] proteins, whereas the other one is cytosolic, specifically involved in the maturation of cytosolic and nuclear [Fe-S] (15); (ii) the yeast frataxin (Yfh1p) is involved in the regulation of iron homeostasis (16,17) and is required for maturation of [Fe-S] cluster containing proteins (18), and its inactivation results in i...

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