Nine structural genes (furA, katG, inhA, kasA, Rv0340, iniB, iniA, iniC, and efpA) and two regulatory regions (the oxyR-ahpC intergenic region and the promoter of mabA-inhA) in 87 isoniazid (INH)-monoresistant and 50 INH-susceptible Mycobacterium tuberculosis isolates collected from five provinces of China were analyzed by sequencing. Eighty-two (94.3%) INH-resistant isolates had mutations in the katG gene, with the katG Ser315Thr mutation predominant (55.2%). No mutation at codon 463 of katG was detected among the 50 INH-susceptible isolates with different IS6110 fingerprints. In addition, there were 35 (40.2%) INH-resistant isolates that had a mutation at codon 463 of katG. Of the INH-resistant strains, 20 (23.0%) isolates harbored double mutations at two separate loci of katG. Mutations in the inhA promoter region occurred in 13 (14.9%) isolates; 4.6% of the isolates had inhA structural gene mutations, and 11.5% harbored mutations in the oxyR-ahpC intergenic region. Drug resistance-associated mutations were detected in the iniBAC region and efpA.Tuberculosis (TB) represents one of the world's greatest sources of mortality and morbidity, with approximately 8 million new infections and 2.5 million to 3 million deaths per year. China has one of the highest burdens of TB in the world, with the second-largest total number of TB cases globally (9, 34, 41). Currently, throughout the world, isoniazid (INH) and rifampin (RIF) together represent the backbone of short-course chemotherapy treatment for Mycobacterium tuberculosis infections. The rise of multidrug-resistant tuberculosis (MDR-TB), defined as TB showing resistance to at least INH and RIF, is a serious threat to TB control. The World Health Organization estimates that 50 million people worldwide are infected with MDR-TB. The highest percentages of MDR-TB cases that are newly contracted have been found in China (11%) and eastern Europe (7 to 14%) (5,10,11).RIF resistance appears to be mediated by mutations of the  subunit of RNA polymerase, which is encoded by the rpoB gene. Previous work indicates that more than 95% of RIFresistant strains are associated with mutations within an 81-bp region of the rpoB gene. Specific mutations, insertions, and deletions have been detected, and this 81-bp region has been termed the rifampin resistance determinant region (7,13,42). In contrast, INH resistance is apparently controlled by a more complex genetic system that involves several genes (15, 31). INH, a first-line antituberculosis drug, has a simple chemical structure consisting of a pyridine ring and a hydrazide group. INH is a prodrug that enters actively growing tubercle bacilli by passive diffusion (4). The bifunctional bacterial enzyme catalase-peroxidase (KatG) converts INH to a range of oxygenated and organic toxic radicals that attack multiple targets in the mycobacterial cell (32, 33). The best-characterized target of these radicals is the cell wall mycolic acid, but DNA, carbohydrates, lipids, and DNA metabolism may be targeted as well (6). Reports suggest th...