Purpose: Prediction models for acute myeloid leukemia (AML) are useful, but have considerable inaccuracy and imprecision. No current model includes covariates related to immune cells in the AML microenvironment. Here, an immune risk score was explored to predict the survival of patients with AML.Experimental Design: We evaluated the predictive accuracy of several in silico algorithms for immune composition in AML based on a reference of multi-parameter flow cytometry. CIBERSORTx was chosen to enumerate immune cells from public datasets and develop an immune risk score for survival in a training cohort using least absolute shrinkage and selection operator Cox regression model.Results: Six flow cytometry-validated immune cell features were informative. The model had high predictive accuracy in the training and four external validation cohorts. Subjects in the training cohort with low scores had prolonged survival compared with subjects with high scores, with 5-year survival rates of 46% versus 19% (P < 0.001). Parallel survival rates in validation cohorts-1, -2, -3, and -4 were 46% versus 6% (P < 0.001), 44% versus 18% (P ¼ 0.041), 44% versus 24% (P ¼ 0.004), and 62% versus 32% (P < 0.001). Gene set enrichment analysis indicated significant enrichment of immune relation pathways in the low-score cohort. In multivariable analyses, high-risk score independently predicted shorter survival with HRs of 1.45 (P ¼ 0.005), 2.12 (P ¼ 0.004), 2.02 (P ¼ 0.034), 1.66 (P ¼ 0.019), and 1.59 (P ¼ 0.001) in the training and validation cohorts, respectively.Conclusions: Our immune risk score complements current AML prediction models.
Understanding threats acting on marine organisms and their conservation status is vital but challenging given a paucity of data. We studied the cumulative human impact (CHI) on and conservation status of seahorses (Hippocampus spp.)—a genus of rare and data‐poor marine fishes. With expert knowledge and relevant spatial data sets, we built linear‐additive models to assess and map the CHI of 12 anthropogenic stressors on 42 seahorse species. We examined the utility of indices of estimated impact (impact of each stressor and CHI) in predicting conservation status for species with random forest (RF) models. The CHI values for threatened species were significantly higher than those for nonthreatened species (category based on International Union for Conservation of Nature Red List). We derived high‐accuracy RF models (87% and 96%) that predicted that 5 of the 17 data‐deficient species were threatened. Demersal fishing practices with high bycatch and pollution were the best predictors of threat category. Major threat epicenters were in China, Southeast Asia, and Europe. Our results and maps of CHI may help guide global seahorse conservation and indicate that modeling and mapping human impacts can reveal threat patterns and conservation status for data‐poor species. We found that for exploring threat patterns of focal species, species‐level CHI models are better than existing ecosystem‐level CHI models.
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