Cell lines were not tested for mycoplasma contamination. Commonly misidentified lines (See ICLAC register) No commonly misidentified cell lines were used.

This is the second paper of a series in which we present new measurements of the observed rates of supernovae (SNe) in the local Universe, determined from the Lick Observatory Supernova Search (LOSS). In this paper, a complete SN sample is constructed, and the observed (uncorrected for host-galaxy extinction) luminosity functions (LFs) of SNe are derived. These LFs solve two issues that have plagued previous rate calculations for nearby SNe: the luminosity distribution of SNe and the host-galaxy extinction. We select a volumelimited sample of 175 SNe, collect photometry for every object and fit a family of light curves to constrain the peak magnitudes and light-curve shapes. The volume-limited LFs show that they are not well represented by a Gaussian distribution. There are notable differences in the LFs for galaxies of different Hubble types (especially for SNe Ia). We derive the observed fractions for the different subclasses in a complete SN sample, and find significant fractions of SNe II-L (10 per cent), IIb (12 per cent) and IIn (9 per cent) in the SN II sample. Furthermore, we derive the LFs and the observed fractions of different SN subclasses in a magnitude-limited survey with different observation intervals, and find that the LFs are enhanced at the highluminosity end and appear more 'standard' with smaller scatter, and that the LFs and fractions of SNe do not change significantly when the observation interval is shorter than 10 d. We also discuss the LFs in different galaxy sizes and inclinations, and for different SN subclasses. Some notable results are that there is not a strong correlation between the SN LFs and the host-galaxy size, but there might be a preference for SNe IIn to occur in small, late-type spiral galaxies. The LFs in different inclination bins do not provide strong evidence for extreme extinction in highly inclined galaxies, though the sample is still small. The LFs of different SN subclasses show significant differences. We also find that SNe Ibc and IIb come from more luminous galaxies than SNe II-P, while SNe IIn come from less luminous galaxies, suggesting a possible metallicity effect. The limitations and applications of our LFs are also discussed.

Brassinosteroids (BRs) regulate plant development through a signal transduction pathway involving the BRI1 and BAK1 transmembrane receptor kinases. The detailed molecular mechanisms of phosphorylation, kinase activation, and oligomerization of the BRI1/BAK1 complex in response to BRs are uncertain. We demonstrate that BR-dependent activation of BRI1 precedes association with BAK1 in planta, and that BRI1 positively regulates BAK1 phosphorylation levels in vivo. BRI1 transphosphorylates BAK1 in vitro on specific kinase-domain residues critical for BAK1 function. BAK1 also transphosphorylates BRI1, thereby quantitatively increasing BRI1 kinase activity toward a specific substrate. We propose a sequential transphosphorylation model in which BRI1 controls signaling specificity by direct BR binding followed by substrate phosphorylation. The coreceptor BAK1 is then activated by BRI1-dependent transphosphorylation and subsequently enhances signaling output through reciprocal BRI1 transphosphorylation. This model suggests both conservation and distinct differences between the molecular mechanisms regulating phosphorylation-dependent kinase activation in plant and animal receptor kinases.

No abstract

Abstract-This paper examines event-triggered data transmission in distributed networked control systems with packet loss and transmission delays. We propose a distributed eventtriggering scheme, where a subsystem broadcasts its state information to its neighbors only when the subsystem's local state error exceeds a specified threshold. In this scheme, a subsystem is able to make broadcast decisions using its locally sampled data. It can also locally predict the maximal allowable number of successive data dropouts (MANSD) and the state-based deadlines for transmission delays. Moreover, the designer's selection of the local event for a subsystem only requires information on that individual subsystem. Our analysis applies to both linear and nonlinear subsystems. Designing local events for a nonlinear subsystem requires us to find a controller that ensures that subsystem to be input-to-state stable. For linear subsystems, the design problem becomes a linear matrix inequality feasibility problem. With the assumption that the number of each subsystem's successive data dropouts is less than its MANSD, we show that if the transmission delays are zero, the resulting system is finite-gain Lp stable. If the delays are bounded by given deadlines, the system is asymptotically stable. We also show that those statebased deadlines for transmission delays are always greater than a positive constant.

This is the third paper of a series in which we present new measurements of the observed rates of supernovae (SNe) in the local Universe, determined from the Lick Observatory Supernova Search (LOSS). We have considered a sample of ∼1000 SNe and used an optimal subsample of 726 SNe (274 SNe Ia, 116 SNe Ibc and 324 SNe II) to determine our rates. We study the trend of the rates as a function of a few quantities available for our galaxy sample, such as luminosity in the B and K bands, stellar mass and morphological class. We discuss different choices (SN samples, input SN luminosity functions, inclination correction factors) and their effect on the rates and their uncertainties. A comparison between our SN rates and the published measurements shows that they are consistent with each other to within the uncertainties when the rate calculations are done in the same manner. Nevertheless, our data demonstrate that the rates cannot be adequately described by a single parameter using either galaxy Hubble types or B − K colours. A secondary parameter in galaxy 'size', expressed by luminosity or stellar mass, is needed to adequately describe the rates in the rate-size relation: the galaxies of smaller sizes have higher SN rates per unit mass or per unit luminosity. The trends of the SN rates in galaxies of different Hubble types and colours are discussed. We examine possible causes for the rate-size relation. Physically, such a relation for the core-collapse SNe is probably linked to the correlation between the specific star-formation rate and the galaxy sizes, but it is not clear whether the same link can be established for SNe Ia. We discuss the two-component ('tardy' and 'prompt') model for SN Ia rates, and find that the SN Ia rates in young stellar populations might have a strong correlation with the core-collapse SN rates. We derive volumetric rates for the different SN types [e.g. for SNe Ia, a rate of (0.301 ± 0.062) × 10 −4 SN Mpc −3 yr −1 at redshift 0] and compare them to the measurements at different redshifts. Finally, we estimate the SN rate for the Milky Way Galaxy to be 2.84 ± 0.60 SNe per century (with a systematic uncertainty of a factor of ∼2), consistent with published SN rates based on several different techniques.

Article Methods Cell lines Cell lines were purchased from ATCC and were not formally authenticated, but confirmation of expected gene expression patterns were performed for RNA-seq and eCLIP experiments. Cell lines were routinely tested for mycoplasma contamination (MycoAlert, Lonza).

Brassinosteroids (BRs) regulate multiple aspects of plant growth and development and require an active BRASSINOSTEROID-INSENSITIVE1 (BRI1) and BRI1-ASSOCIATED RECEPTOR KINASE1 (BAK1) for hormone perception and signal transduction. Many animal receptor kinases exhibit ligand-dependent oligomerization followed by autophosphorylation and activation of the intracellular kinase domain. To determine if early events in BR signaling share this mechanism, we used coimmunoprecipitation of epitope-tagged proteins to show that in vivo association of BRI1 and BAK1 was affected by endogenous and exogenous BR levels and that phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Immunoprecipitation of epitope-tagged BRI1 from Arabidopsis thaliana followed by liquid chromatography-tandem mass spectrometry (LC/MS/MS) identified S-838, S-858, T-872, and T-880 in the juxtamembrane region, T-982 in the kinase domain, and S-1168 in C-terminal region as in vivo phosphorylation sites of BRI1. MS analysis also strongly suggested that an additional two residues in the juxtamembrane region and three sites in the activation loop of kinase subdomain VII/VIII were phosphorylated in vivo. We also identified four specific BAK1 autophosphorylation sites in vitro using LC/MS/MS. Sitedirected mutagenesis of identified and predicted BRI1 phosphorylation sites revealed that the highly conserved activation loop residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. Mutations in the juxtamembrane or C-terminal regions had only small observable effects on autophosphorylation and in planta signaling but dramatically affected phosphorylation of a peptide substrate in vitro. These findings are consistent with many aspects of the animal receptor kinase model in which ligand-dependent autophosphorylation of the activation loop generates a functional kinase, whereas phosphorylation of noncatalytic intracellular domains is required for recognition and/or phosphorylation of downstream substrates.