One-third of the 4,225 protein-coding genes of Escherichia coli K-12 remain functionally unannotated (orphans). Many map to distant clades such as Archaea, suggesting involvement in basic prokaryotic traits, whereas others appear restricted to E. coli, including pathogenic strains. To elucidate the orphans' biological roles, we performed an extensive proteomic survey using affinity-tagged E. coli strains and generated comprehensive genomic context inferences to derive a high-confidence compendium for virtually the entire proteome consisting of 5,993 putative physical interactions and 74,776 putative functional associations, most of which are novel. Clustering of the respective probabilistic networks revealed putative orphan membership in discrete multiprotein complexes and functional modules together with annotated gene products, whereas a machine-learning strategy based on network integration implicated the orphans in specific biological processes. We provide additional experimental evidence supporting orphan participation in protein synthesis, amino acid metabolism, biofilm formation, motility, and assembly of the bacterial cell envelope. This resource provides a “systems-wide” functional blueprint of a model microbe, with insights into the biological and evolutionary significance of previously uncharacterized proteins.

Physical and functional interactions define the molecular organization of the cell. Genetic interactions, or epistasis, tend to occur between gene products involved in parallel pathways or interlinked biological processes. High-throughput experimental systems to examine genetic interactions on a genome-wide scale have been devised for Saccharomyces cerevisiae, Schizosaccharomyces pombe, Caenorhabditis elegans and Drosophila melanogaster, but have not been reported previously for prokaryotes. Here we describe the development of a quantitative screening procedure for monitoring bacterial genetic interactions based on conjugation of Escherichia coli deletion or hypomorphic strains to create double mutants on a genome-wide scale. The patterns of synthetic sickness and synthetic lethality (aggravating genetic interactions) we observed for certain double mutant combinations provided information about functional relationships and redundancy between pathways and enabled us to group bacterial gene products into functional modules.

The achievement of structural color has shown advantages in large-gamut, high-saturation, high-brightness, and high-resolution. While a large number of plasmonic/dielectric nanostructures have been developed for structural color, the previous approaches fail to match all the above criterion simultaneously. Herein we utilize the Si metasurface to demonstrate an all-in-one solution for structural color. Due to the intrinsic material loss, the conventional Si metasurfaces only have a broadband reflection and a small gamut of 78% of sRGB. Once they are combined with a refractive index matching layer, the reflection bandwidth and the background reflection are both reduced, improving the brightness and the color purity significantly. Consequently, the experimentally demonstrated gamut has been increased to around 181.8% of sRGB, 135.6% of Adobe RGB, and 97.2% of Rec.2020. Meanwhile, high refractive index of silicon preserves the distinct color in a pixel with 2 × 2 array of nanodisks, giving a diffraction-limit resolution.

Meta-holographic encryption is a potentially important technique for information security. Despite rapid progresses in multi-tasked meta-holograms, the number of information channels available in metasurfaces is limited, making meta-holographic encryption vulnerable to some attacking algorithms. Herein, we demonstrate a re-programmable metasurface that can produce arbitrary holographic images for optical encryption. The encrypted information is divided into two matrices. These two matrices are imposed to the incident light and the metasurface, respectively. While the all-dielectric metasurface is static, the phase matrix of incident light provides additional degrees of freedom to precisely control the eventual functions at will. With a single Si metasurface, arbitrary holographic images and videos have been transported and decrypted. We hope that this work paves a more promising way to optical information encryption and authentication.

Structural colors arising from all-dielectric nanostructures are very promising for high-resolution color nanoprinting and high-density optical storage. However, once the all-dielectric nanostructures are fabricated, their optical performances are usually static or change slowly, significantly limiting the practical applications in advanced displays. Herein, we experimentally demonstrate the real-time tunable colors with microfluidic reconfigurable all-dielectric metasurfaces. The metasurface is composed of an array of TiO nanoblocks, which are embedded in a polymeric microfluidic channel. By injecting solutions with a different refractive index into the channel, the narrow band reflection peak and the corresponding distinct colors of a TiO metasurface can be precisely controlled. The transition time is as small as 16 ms, which is orders of magnitude faster than the current techniques. By varying the lattice size of TiO metasurfaces, the real-time tunable colors are able to span the entire visible spectrum. Meanwhile, the injection and ejection of solvent have also shown the capability of the erasion and the restoration of information encoded in TiO metasurfaces. The combination of all-dielectric nanostructures with microfluidic channels shall boost their applications in functional color display, banknote security, anticounterfeiting, and point-of-care devices.

Over the past years, broadband achromatic metalenses have been intensively studied due to their great potential for applications in consumer and industry products. Even though significant progress has been made, the efficiency of technologically relevant silicon metalenses is limited by the intrinsic material loss above the bandgap. In turn, the recently proposed achromatic metalens utilizing transparent, high-index materials such as titanium dioxide has been restricted by the small thickness and showed relatively low focusing efficiency at longer wavelengths. Consequently, metalens-based optical imaging in the biological transparency window has so far been severely limited. Herein, we experimentally demonstrate a polarization-insensitive, broadband titanium dioxide achromatic metalens for applications in the near-infrared biological imaging. A large-scale fabrication technology has been developed to produce titanium dioxide nanopillars with record-high aspect ratios featuring pillar heights of 1.5 µm and ~90° vertical sidewalls. The demonstrated metalens exhibits dramatically increased group delay range, and the spectral range of achromatism is substantially extended to the wavelength range of 650–1000 nm with an average efficiency of 77.1%–88.5% and a numerical aperture of 0.24–0.1. This research paves a solid step towards practical applications of flat photonics.

Understanding the chirality induction and amplification processes, and the construction of globally homochiral surfaces, represent essential challenges in surface chirality studies. Here we report the induction of global homochirality in two-dimensional enantiomorphous networks of achiral molecules via co-assembly with chiral co-absorbers. The scanning tunnelling microscopy investigations and molecular mechanics simulations demonstrate that the point chirality of the co-absorbers transfers to organizational chirality of the assembly units via enantioselective supramolecular interactions, and is then hierarchically amplified to the global homochirality of two-dimensional networks. The global homochirality of the network assembly shows nonlinear dependence on the enantiomeric excess of chiral co-absorber in the solution phase, demonstrating, for the first time, the validation of the ‘majority rules’ for the homochirality control of achiral molecules at the liquid/solid interface. Such an induction and nonlinear chirality amplification effect promises a new approach towards two-dimensional homochirality control and may reveal important insights into asymmetric heterogeneous catalysis, chiral separation and chiral crystallization.

TiO2 metasurfaces have been intensively studied in the past few years. To date, the TiO2 metadevices only used their high reflective index (n). The controllable light extinction coefficient (k) of TiO2 has not been exploited yet. Here, we converted TiO2 metasurfaces to black TiO2 metasurfaces and explored their new opportunities in photochemistry. A complementary metal oxide semiconductor (CMOS)–compatible technique has been developed to reversibly and precisely control the absorption of TiO2 metasurfaces without spoiling their internal nanostructures. Consequently, two types of black TiO2 metasurfaces were realized for photochemical experiments. The metasurface with an ultrawide absorption band can substantially enhance the white light absorption and accelerate the solar-based photochemistry process by a factor of 18.7. The other metasurface with an absorption band of <20 nm only responded to the resonant wavelengths, making the photochemistry process capable of being monitored in real time. In addition, the reversible switch between normal and black states makes TiO2 metasurfaces suitable for dynamic metadevices as well.