The nitrogen (N)-use efficiency of agricultural plants is notoriously poor. Globally, about 50% of the N fertilizer applied to cropping systems is not absorbed by plants, but lost to the environment as ammonia (NH), nitrate (NO), and nitrous oxide (NO, a greenhouse gas with 300 times the heat-trapping capacity of carbon dioxide), raising agricultural production costs and contributing to pollution and climate change. These losses are driven by volatilization of NH and by a matrix of nitrification and denitrification reactions catalysed by soil microorganisms (chiefly bacteria and archaea). Here, we discuss mitigation of the harmful and wasteful process of agricultural N loss via biological nitrification inhibitors (BNIs) exuded by plant roots. We examine key recent discoveries in the emerging field of BNI research, focusing on BNI compounds and their specificity and transport, and discuss prospects for their role in improving agriculture while reducing its environmental impact.

Summary Maintenance of root growth is essential for plant adaptation to soil drying. Here, we tested the hypothesis that auxin transport is involved in mediating ABA's modulation by activating proton secretion in the root tip to maintain root growth under moderate water stress. Rice and Arabidopsis plants were raised under a hydroponic system and subjected to moderate water stress (−0.47 MPa) with polyethylene glycol (PEG). ABA accumulation, auxin transport and plasma membrane H+‐ATPase activity at the root tip were monitored in addition to the primary root elongation and root hair density. We found that moderate water stress increases ABA accumulation and auxin transport in the root apex. Additionally, ABA modulation is involved in the regulation of auxin transport in the root tip. The transported auxin activates the plasma membrane H+‐ATPase to release more protons along the root tip in its adaption to moderate water stress. The proton secretion in the root tip is essential in maintaining or promoting primary root elongation and root hair development under moderate water stress. These results suggest that ABA accumulation modulates auxin transport in the root tip, which enhances proton secretion for maintaining root growth under moderate water stress.

The salt tolerance gene SOS3 (for salt overly sensitive3) of Arabidopsis is predicted to encode a calcium binding protein with an N-myristoylation signature sequence. Here, we examine the myristoylation and calcium binding properties of SOS3 and their functional significance in plant tolerance to salt. Treatment of young Arabidopsis seedlings with the myristoylation inhibitor 2-hydroxymyristic acid caused the swelling of root tips, mimicking the phenotype of the salt-hypersensitive mutant sos3-1 . In vitro translation assays with reticulocyte showed that the SOS3 protein was myristoylated. Targeted mutagenesis of the N-terminal glycine-2 to alanine prevented the myristoylation of SOS3. The functional significance of SOS3 myristoylation was examined by expressing the wild-type myristoylated SOS3 and the mutated nonmyristoylated SOS3 in the sos3-1 mutant. Expression of the myristoylated but not the nonmyristoylated SOS3 complemented the salt-hypersensitive phenotype of sos3-1 plants. No significant difference in membrane association was observed between the myristoylated and nonmyristoylated SOS3. Gel mobility shift and 45 Ca 2 ϩ overlay assays demonstrated that SOS3 is a unique calcium binding protein and that the sos3-1 mutation substantially reduced the capacity of SOS3 to bind calcium. The resulting mutant SOS3 protein was not able to interact with the SOS2 protein kinase and was less capable of activating it. Together, these results strongly suggest that both N-myristoylation and calcium binding are required for SOS3 function in plant salt tolerance.

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Vegetable cultivation during winter season is economically profitable, but the impact of the intensive production on soil and water quality remains to be studied. The objectives of this study were to investigate the seasonal dynamics of soil nutrients, acidification and salt accumulation in vegetable fields in South-Eastern China. Various vegetables were grown either under open-field conditions or under two different alternating open-field and greenhouse conditions with three replications. Soil samples were collected periodically and analyzed for pH, plant available nitrogen (N), phosphorous (P), potassium (K), electrical conductivity (EC), and urease activity. Water samples from wells located in or near the plots were collected and analyzed for nitrate. Soil nitrate, available phosphate and salt concentrations declined in summer under open-field conditions and significantly increased from December to May under greenhouse conditions. Exchangeable K also decreased in summer season, but did not increase in the spring. Under alternating open-field and greenhouse conditions, nutrient accumulation, soil salinity and acidification were significantly higher for soil used for vegetable cultivation for 2 years (2-y-plot) than that for only half year (0.5-y-plot). The accumulation of nitrate significantly correlated with soil EC and soil acidification. Thirty-two percent of groundwater samples from the 2-y-plot showed a nitrate concentration higher than 50 mg NO 3 l -1 . Conversely, no groundwater sample of 0.5-y-plot showed such high nitrate concentration. It can be concluded that the nitrate accumulation in soil used for vegetable cultivation under alternating openfield and greenhouse conditions not only causes soil salinization and soil acidification but also presents a high pollution potential for groundwater.

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Two rice cultivars, Xiushui 48 and S. Andrea, with significant difference in selenium (Se) concentrations in brown rice grains, were chosen to study the Se absorption and its mechanism in excised roots. The results showed that the high-selenium cultivar Xiushui 48 absorbed higher amounts of Na 2 SeO 3 than low-selenium S. Andrea at different Se levels and treatment periods. It was found that Na 2 SO 3 markedly inhibited Na 2 SeO 3 absorption by the excised roots of both cultivars. This inhibition might be due to the competition for uptake on the fact that Na 2 SO 3 might share a common uptake pathway with Na 2 SeO 3 . Treatment with ZnCl 2 significantly decreased Na 2 SeO 3 absorption of both cultivars possibly by inhibiting the activity of cysteine synthase. It was therefore postulated that the difference in cysteine synthase activity might be one of the reasons which resulted in difference in selenite absorption possibly between the two cultivars. Both HgCl 2 and AgNO 3 treatments can inhibit selenite absorption by rice roots greatly. We propose that selenite enters rice roots through aquaporins as the form of H 2 SeO 3 .

Microbial nitrification in soils is a major contributor to nitrogen (N) loss in agricultural systems. Some plants can secrete organic substances that act as biological nitrification inhibitors (BNIs), and a small number of BNIs have been identified and characterized. However, virtually no research has focused on the important food crop, rice (Oryza sativa). Here, 19 rice varieties were explored for BNI potential on the key nitrifying bacterium Nitrosomonas europaea. Exudates from both indica and japonica genotypes were found to possess strong BNI potential. Older seedlings had higher BNI abilities than younger ones; Zhongjiu25 (ZJ25) and Wuyunjing7 (WYJ7) were the most effective genotypes among indica and japonica varieties, respectively. A new nitrification inhibitor, 1,9-decanediol, was identified, shown to block the ammonia monooxygenase (AMO) pathway of ammonia oxidation and to possess an 80% effective dose (ED ) of 90 ng μl . Plant N-use efficiency (NUE) was determined using a N-labeling method. Correlation analyses indicated that both BNI abilities and 1,9-decanediol amounts of root exudates were positively correlated with plant ammonium-use efficiency and ammonium preference. These findings provide important new insights into the plant-bacterial interactions involved in the soil N cycle, and improve our understanding of the BNI capacity of rice in the context of NUE.