In recent decades, human-wildlife interaction and associated anthropogenic food provisioning has been increasing and becoming more severe due to fast population growth and urban development. Noting the role of the gut microbiome in host physiology like nutrition and health, it is thus essential to understand how human-wildlife interactions and availability of anthropogenic food in habitats can affect an animal's gut microbiome. This study, therefore, set out to examine the gut microbiota of Japanese macaques (Macaca fuscata) with varying accessibility to anthropogenic food and the possibility of using gut microbiota as indicator for macaques' reliance on anthropogenic food. Using 16S ribosomal RNA gene sequencing, we described the microbial composition of Japanese macaques experiencing different types of human disturbance and anthropogenic food availability-captive, provisioned, crop-raiding, and wild. In terms of alpha diversity, our results showed that observed richness of gut microbiota did not differ significantly between disturbance types but among collection sites, whereas Shannon diversity index differed by both disturbance types and sites. In terms of beta diversity, captive populations harbored the most distinctive gut microbial composition, and had the greatest difference compared with wild populations. Whereas for provisioned and crop-raiding groups, the macaques exhibited intermediate microbiota between wild and captive. We identified several potential bacterial taxa at different taxonomic ranks whose abundance potentially could help in assessing macaques' accessibility to anthropogenic food. This study revealed the flexibility of the gut microbiome of Japanese macaques and provided possible indices based on the gut microbiome profile in assessing macaques' accessibility to/reliance on anthropogenic foods.

Fermentation by gut microbe of Japanese macaques Hanya et al.

Background Changes in the gut microbial composition is an important response to cope with the seasonal fluctuations in the environment such as food availability. We examined the bacterial gut microbiome of the wild nonhuman primate, Japanese macaque (Macaca fuscata) in Yakushima over 13 months by noninvasive continuous sampling from three identified adult females. Results Dietary composition varied considerably over the study period and displayed marked shifts with the seasons. Feeding of leaves, fruits, and invertebrates were their main foods for at least one month. Diet had a significant influence on the gut microbiome. We also confirmed significant effect of host uniqueness in the gut microbiome among the three macaques. Leaf-dominated diet shaped unique gut microbiome structures where the macaques had the highest alpha diversity and their gut microbiome was enriched with Spirochaetes and Tenericutes. Diet-related differences in the putative function were detected, such as a differentially abundant urea cycle during the leaf-feeding season. Conclusion Both diet and host individuality exerted similar amounts of effect on gut microbe community composition. Major bacterial taxa showed a similar response to monthly fluctuations of fruit and invertebrate feeding, which was largely opposite to that of leaf feeding. The main constituents of fruits and invertebrates are both digestible with the enzyme of the host animals, but that of leaves is not available as an energy source without the aid of the fermentation of the gut microbiome.

Fecal particle size provides important information on the feeding and digestion of herbivores. Understanding the effects of the potential proximate determinants on fecal particle size helps us interpret this widely used measurement. In folivores, previous studies found that diet composition, dietary toughness, and age-sex-related factors, such as body size and tooth wear, influenced fecal particle size. However, the role of these factors remains unknown in frugivorous and omnivorous primates. This study aims to clarify how age-sex class and diet influence fecal particle size in omnivorous Japanese macaques in Yakushima. We expected that their variable diet and differences among age-sex classes would cause variations in fecal particle size. We simultaneously documented Japanese macaques' diet, dietary toughness, and fecal particle size in the lowland area of Yakushima in the period from March 2018 to April 2019.Unexpectedly, fecal particle size showed limited differences across months and no difference among age-sex classes. Dietary toughness showed no effects on fecal particle size, while the consumption of fruits showed only a marginally significant negative effect. Our data indicate that the results of chewing were not affected by dietary toughness in our study subjects, while age-sex classes showed no difference in food comminution. This lack of variation might derive from a diet with low dietary toughness. We also found that the physical structure of preferred foods played an important role in fecal particle size variations. These results suggest that food comminution is less variable in frugivorous and omnivorous primates compared to highly specialized species (e.g., geladas). Factors other than what we examined in this study, such as food physical structure and chewing behavior, should also be taken into consideration.

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