Abstract. In the present study, we measured independently CH4 ebullition and diffusion in the footprint of an eddy covariance system (EC) measuring CH4 emissions in the Nam Theun 2 Reservoir, a recently impounded (2008) subtropical hydroelectric reservoir located in the Lao People's Democratic Republic (PDR), Southeast Asia. The EC fluxes were very consistent with the sum of the two terms measured independently (diffusive fluxes + ebullition = EC fluxes), indicating that the EC system picked up both diffusive fluxes and ebullition from the reservoir. We showed a diurnal bimodal pattern of CH4 emissions anti-correlated with atmospheric pressure. During daytime, a large atmospheric pressure drop triggers CH4 ebullition (up to 100 mmol m−2 d−1), whereas at night, a more moderate peak of CH4 emissions was recorded. As a consequence, fluxes during daytime were twice as high as during nighttime. Additionally, more than 4800 discrete measurements of CH4 ebullition were performed at a weekly/fortnightly frequency, covering water depths ranging from 0.4 to 16 m and various types of flooded ecosystems. Methane ebullition varies significantly seasonally and depends mostly on water level change during the warm dry season, whereas no relationship was observed during the cold dry season. On average, ebullition was 8.5 ± 10.5 mmol m−2 d−1 and ranged from 0 to 201.7 mmol m−2 d−1. An artificial neural network (ANN) model could explain up to 46% of seasonal variability of ebullition by considering total static pressure (the sum of hydrostatic and atmospheric pressure), variations in the total static pressure, and bottom temperature as controlling factors. This model allowed extrapolation of CH4 ebullition on the reservoir scale and performance of gap filling over four years. Our results clearly showed a very high seasonality: 50% of the yearly CH4 ebullition occurs within four months of the warm dry season. Overall, ebullition contributed 60–80% of total emissions from the surface of the reservoir (disregarding downstream emissions), suggesting that ebullition is a major pathway in young hydroelectric reservoirs in the tropics.

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Gross CO2 and CH4 emissions (degassing and diffusion from the reservoir) and the carbon balance were assessed in 2009-2010 in two Southeast Asian sub-tropical reservoirs: the Nam Ngum and Nam Leuk Reservoirs (Lao PDR). These two reservoirs are within the same climatic area but differ mainly in age, size, residence time and initial biomass stock. The Nam Leuk Reservoir was impounded in 1999 after partial vegetation clearance and burning. However, GHG emissions are still significant 10 years after impoundment. CH4 diffusive flux ranged from 0.8 (January 2010) to 11.9 mmol m(-2) d(-1) (April 2009) and CO2 diffusive flux ranged from -10.6 (October 2009) to 38.2 mmol m(-2) d(-1) (April 2009). These values are comparable to other tropical reservoirs. Moreover, degassing fluxes at the outlet of the powerhouse downstream of the turbines were very low. The tentative annual carbon balance calculation indicates that this reservoir was a carbon source with an annual carbon export (atmosphere+downstream river) of about 2.2±1.0 GgC yr(-1). The Nam Ngum Reservoir was impounded in 1971 without any significant biomass removal. Diffusive and degassing CO2 and CH4 fluxes were lower than for other tropical reservoirs. Particularly, CO2 diffusive fluxes were always negative with values ranging from -21.2 (April 2009) to -2.7 mmol m(-2) d(-1) (January 2010). CH4 diffusive flux ranged from 0.1 (October 2009) to 0.6 mmol m(-2) d(-1) (April 2009) and no degassing downstream of the turbines was measured. As a consequence of these low values, the reservoir was a carbon sink with an estimated annual uptake of - 53±35 GgC yr(-1).

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Biodiversity has to be accurately evaluated to assess more precisely possible dam effects on fish populations, in particular on the most biodiverse rivers such as the Mekong River. To improve tools for fish biodiversity assessment, a methodological survey was performed in the surroundings of a recent hydropower dam in the Mekong basin, the Nam Theun 2 project. Results of two different approaches, experimental surface gillnets capture and environmental DNA metabarcoding assays based on 12S ribosomal RNA and cytochrome b, were compared during 3 years (2014–2016). Pitfalls and benefits were identified for each method but the combined use of both approaches indisputably allows describing more accurately fish diversity around the reservoir. Importantly, striking convergent results were observed for biodiversity reports. 75% of the fish species caught by gillnets (62/82) were shown by the metabarcoding study performed on DNA extracted from water samples. eDNA approach also revealed to be sensitive by detecting 30 supplementary species known as present before the dam construction but never caught by gillnets during 3 years. Furthermore, potential of the marker-genes study might be underestimated since it was not possible to assign some sequences at lower taxonomic levels. Although 121 sequences were generated for this study, a third of species in the area, that exhibits high endemism, are still unknown in DNA databases. Efforts to complete local reference libraries must continue to improve the taxonomic assignment quality when using the non-invasive and promising eDNA approach. These results are of broader interest because of increasing number of hydropower projects in the Mekong Basin. They reveal the crucial importance to sample tissues/DNA of species before dam projects, i.e. before the species could become endangered and difficult to catch, to obtain more precise biomonitoring in the future as we believe eDNA metabarcoding will rapidly be integrated as a standard tool in such studies.

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