Summary
Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams.
A main breeding target of the International Potato Center (CIP) has been the biofortification of potato (Solanum tuberosum L.) with the essential micronutrients iron and zinc. This study assessed the broad‐sense heritability (H2) and genetic gains (ΔGs) achieved for iron and zinc concentrations in potato tubers and their relationships with yield components through three cycles of recurrent selection at the diploid level. Sixty genotypes comprising 17 Andean landraces from a base population called Cycle 0, 21 genotypes from Cycle II, and 22 from Cycle III were grown in field trials over 2 yr to compare micronutrient concentrations and agronomic performance. The effects of cycles and cycles × location interactions were both significant (P < .01) for all characters except tuber yield. High phenotypic and genotypic coefficients of variation along with high H2 (0.81 ± 0.19 for both iron and zinc) suggested that these parameters were under the control of additive gene effects and could be effectively manipulated by recurrent selection. Large gains of more than 29% iron and 26% zinc were demonstrated. There were slight decreases in dry matter (DM) content of 2 and 5% in Cycles II and III, respectively. Iron concentration had the greatest positive direct effect on total number of tubers per plant, and zinc had a weak negative direct effect on average tuber weight. Selected iron‐ and zinc‐dense genotypes with high, positive general combining ability were identified for use in an interploidy (4x–2x) breeding scheme aimed at increasing the iron and zinc contents of stable, high‐yielding disease and stress‐resistant varieties.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.