In the year 2000 an epidemiological research was undertaken on the health status of free-living pigeons in the city of Ljubljana, Slovenia. A total of 139 pigeons were captured and examined for the most common bacterial, viral, and parasitic diseases. Serum samples, oropharyngeal and cloacal swabs as well as samples of droppings and feathers were taken from the captured birds. Antibodies to paramyxovirus type 1 were found in 84.2% of the sera examined, and 23.7% of birds were serologically positive to Chlamydophila psittaci. Antibodies to avian influenza virus were not detected. Salmonella spp. were isolated from 5.7% of the cloacal swabs. Trichomonas gallinae was clinically suspected and then microscopically confirmed using oropharyngeal swabs in 7.9% of examined birds. Eimeria spp. was identified in 71.9%, Capillaria sp. in 26.6% and Ascaridia columbae in 4.3% of droppings samples examined. Of the ectoparasites, Columbicola columbae and Campanulotes bidentatus compar were found.

Fifteen infectious bronchitis viruses (IBV) isolated from broiler and broiler breeder flocks in Slovenia between 1990 and 2005 were molecularly characterised. IBV strains were divided into four genotypes by the analysis of the S1 gene region. Four strains belonged to the Massachusetts genotype, one strain was placed into the QX genotype, one strain formed a cluster together with the B1648 strain and nine strains were classified into the 624/I genotype. Nine Slovenian strains of the 624/I genotype formed two subgroups independently of the time of isolation and the geographical origin. Phylogenetic analysis of the partial N gene sequences revealed lower sequence variability and different clustering of the Slovenian IBV. Fourteen strains were grouped together with the strains H120 and D1466. One strain formed a cluster with the strain 793/B.

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The causative agent of inclusion body hepatitis (IBH) was identified as fowl adenovirus (FAdV) type 8b, a member of the Fowl adenovirus E species, based on PCR results of adenoviral polymerase and the hexon gene in an outbreak of acute mortality that affected a broiler flock of 12,000 animals. In two waves of elevated mortality rate, a total of 264 chickens were found dead. Affected birds showed ruffled feathers, depression, watery droppings and limping. The most common pathological lesions seen on necropsy were pale, swollen and friable livers. On histological examination, acute hepatitis characterized by necrosis of hepatocytes, with large basophilic intranuclear inclusion bodies, were observed. In addition, infectious bursal disease virus and infectious bronchitis virus were detected in the same flock

Pigeon circovirus (PiCV) was detected by real-time PCR in cloacal swabs, pharyngeal swabs, and serum samples taken from 74 feral pigeons (Columba livia var. domestica) that were caught at various locations in the city of Ljubljana, Slovenia. PiCV infections were detected in the majority of the tested birds. The highest (74.3%) detection rate was observed in the cloacal swabs and the lowest (31.1%) in serum samples. PiCV DNA was more readily detected in the cloacal swabs, pharyngeal swabs, and serum samples of birds younger than 1 yr. Molecular analysis of partial open reading frame V1 sequences showed that PiCV strains detected in feral pigeons share high nucleotide and amino acid sequence identities with PiCV strains detected in ornamental, racing, meat, and feral pigeons.