A major challenge in hepatitis C research is the detection of early potential for progressive liver disease. MicroRNAs (miRNAs) are small RNAs that regulate gene expression and can be biomarkers of pathological processes. In this study, we compared circulating miRNAs identified in hepatitis C virus (HCV)-infected patients presenting two extremes of liver disease: mild/moderate fibrosis and cirrhosis. The patients in the cirrhosis group subsequently developed hepatocellular carcinoma (HCC). We identified 163 mature miRNAs in the mild/moderate fibrosis group and 171 in the cirrhosis group, with 144 in common to both groups. Differential expression analysis revealed 5 upregulated miRNAs and 2 downregulated miRNAs in the cirrhosis group relative to the mild/moderate fibrosis group. Functional analyses of regulatory networks (target gene and miRNA) identified gene categories involved in cell cycle biological processes and metabolic pathways related to cell cycle, cancer, and apoptosis. These results suggest that the differentially expressed circulating miRNAs observed in this work (miR-215-5p, miR-483-5p, miR-193b-3p, miR-34a-5p, miR-885-5p, miR-26b-5p and miR -197-3p) may be candidates for biomarkers in the prognosis of liver disease.
Trypanosomatids are parasites that cause disease in humans, animals, and plants. Most are non-pathogenic and some harbor a symbiotic bacterium. Endosymbiosis is part of the evolutionary process of vital cell functions such as respiration and photosynthesis. Angomonas deanei is an example of a symbiont-containing trypanosomatid. In this paper, we sought to investigate how symbionts influence host cells by characterising and comparing the transcriptomes of the symbiont-containing A. deanei (wild type) and the symbiont-free aposymbiotic strains. The comparison revealed that the presence of the symbiont modulates several differentially expressed genes. Empirical analysis of differential gene expression showed that 216 of the 7625 modulated genes were significantly changed. Finally, gene set enrichment analysis revealed that the largest categories of genes that downregulated in the absence of the symbiont were those involved in oxidation-reduction process, ATP hydrolysis coupled proton transport and glycolysis. In contrast, among the upregulated gene categories were those involved in proteolysis, microtubule-based movement, and cellular metabolic process. Our results provide valuable information for dissecting the mechanism of endosymbiosis in A. deanei.
Findings about CO2 dynamics in the Earth’s ancestral atmosphere have suggested much higher concentrations in past eras. Along this line, cyanobacteria are an early evolved photosynthetic group that is suggested to have experienced both high and low CO2 availability since their Precambrian origin, and therefore, it is reasonable to assume that these microbes have the potential to cope with these scenarios by rapidly adjusting to various carbon dioxide levels. Thus, in this work, we performed a short-term (72-h) investigation of the physiological parameters (cell growth, photosynthesis and saxitoxin production) of toxic and nontoxic strains of the cyanobacterium Raphidiopsis raciborskii challenged by an extremely high pCO2 (40,000 ppm). Additionally, the transcriptomic profile (regarding the carbon concentrating mechanism and photosynthesis) of selected toxic and nontoxic strains is also presented. We found that short-term exposure to extremely elevated CO2 concentrations did not affect R. raciborskii physiology regardless of toxin production. However, transcripts related to bicarbonate transporters and the RuBisCO enzyme indicated the upregulation of CCM and downregulation of the Calvin cycle, respectively. According to our findings, at least at the initial growth phase, R. raciborskii was able to cope with a very high CO2 level, which shed light on the understanding that this species might have the potential to cope with carbon dioxide in water above the predicted levels.
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