A cytopathic agent (A308/99) was isolated using Vero cells from a stool specimen of a 1-year-old patient with transient paralysis. The agent was approximately 28 nm in diameter with a distinct ultrastructure resembling the virus particle of an enterovirus. It could not be neutralized by antisera against human picornaviruses such as human enterovirus, Aichi virus or human parechovirus. The virion contained three capsid proteins with molecular masses of 38, 30?3 and 30 kDa. Determination of the complete nucleotide sequence of A308/99 revealed that the nucleotide and deduced amino acid sequences were closely related to those of human parechoviruses. When 11 regions encoding the structural and non-structural proteins were compared, A308/99 had between 75 and 97 % and 73 and 97 % nucleotide identity with human parechovirus type 1 (HPeV-1) and type 2 (HPeV-2), respectively. The most distinctive divergence was seen in VP1, which had 74?5 % and 73?1 % nucleotide identity with HPeV-1 and HPeV-2, respectively. Viruses related to A308/99 were also isolated from three patients with gastroenteritis, exanthema or respiratory illnesses. A308/99 and these other three isolates had no arginine-glycine-aspartic acid (RGD) motif, which is located near the C terminus of VP1 in HPeV-1 and HPeV-2. A seroepidemiological study revealed that the prevalence of A308/99 antibodies was low (15 %) among infants but became higher with age, reaching more than 80 % by 30 years of age. These observations indicate that A308/99 is genetically close to, but serologically and genetically distinct from, HPeV-1 and HPeV-2 and accordingly can be classified as third serotype of human parechovirus.

Fecal extracts from 12 subjects in outbreaks of oyster-associated nonbacterial gastroenteritis were inoculated with BS-C-1 cells for isolation of the causative viruses. Cytopathic agents were isolated from 3 patients. No cross-neutralizing reactions were observed between the isolates and prototypes of human enteroviruses. The isolates were approximately 30 nm in diameter and had a distinct ultrastructure resembling that of astroviruses. Four polypeptide bands with molecular sizes of 42, 28, 27, and 22 kDa were seen on SDS-PAGE analyses. Seroconversion against the isolate was observed in 18 (31.6%) of 57 patients involved in five of seven outbreaks examined by neutralization test. A protein band characteristically reactive with the paired serum samples was detectable at 42 kDa by immunoblot assay. These results suggested that some small round viruses resembling astroviruses might show cytopathic effect in BS-C-1 cells and may be associated with an oyster-related gastroenteritis.

[1] Slow earthquakes called episodic tremor and slip (ETS) events propagate over 100 km at low average velocities, $10 km per day, along several plate interfaces accompanying seismic and aseismic slip. These low propagation velocities differentiate slow earthquakes from ordinary earthquakes, and thus understanding their propagation processes is fundamental to understanding the poorly constrained physics governing the diversity and universality of earthquakes. We show that rheological heterogeneity on faults primarily governs ETS propagation on the basis of comprehensive modeling and observations that correlate migration patterns with the energetics of tremor on a plate-bounding fault in southwest Japan. The fault has persistent small-scale segmentation, in which ETS events started propagating energetically in relatively brittle sections and decelerated generally with a parabolic pattern in relatively ductile sections. Simulated spontaneous ruptures that are based on these parabolic tremor migration patterns constrain the cause of ductility to Newtonian plastic flow or perhaps dilatant strengthening, but reject large-scale fluid flows. We discuss possible elementary processes underlying the Newtonian rheology. This model is also consistent with the observed seismicity migration pattern before the 2011 M w 9.0 Tohoku-oki earthquake, suggesting delayed triggering by the M w 7.3 foreshock.Citation: Ando, R., N. Takeda, and T. Yamashita (2012), Propagation dynamics of seismic and aseismic slip governed by fault heterogeneity and Newtonian rheology,

A cytopathic agent was isolated using Vero cells from the culture medium of HeLa cells that had been used for more than 30 years in our laboratory. This agent, termed U-1 strain, was serially passed in Vero cells with distinct CPE. Particles of U-1 strain negatively stained with phosphotungstic acid exhibited a distinct surface that resembled Aichi virus. The RNA genome of U-1 strain comprises 8374 nt, with a genome organization analogous to that of picornaviruses. Possible cleavage sites of the large ORF, which encoded a leader protein prior to the capsid protein region, were assigned following amino acid alignment with Aichi virus. The virus sequence had 33 and 75 % amino acid identity with the Aichi virus VP1 and 3D regions, respectively, but no more than 23 and 36 % with those of the prototype strains of other Picornaviridae. The dendrogram based on the P1, P2 and P3 proteins indicated that U-1 strain is genetically included in the genus Kobuvirus but is distinct from Aichi virus. Of 72 cattle sera, 43 (59?7 %) were positive for neutralizing antibody against U-1 strain at a titre of 1 : 8 or more. However, sera from 190 humans, 242 monkeys, 139 pigs, 5 horses, 22 dogs and 9 cats did not neutralize U-1 strain at a 1 : 4 dilution. RNA corresponding to U-1 strain was detected in 12 (16?7 %) of 72 faecal samples from cattle by RT-PCR. These results indicated that U-1 strain, suspected to be a contaminant from calf sera, is a new species of the genus Kobuvirus, now termed bovine kobuvirus.

To understand constitutive behavior near the rupture front during an earthquake source shear failure along a preexisting fault in terms of physics, local breakdown processes near the propagating tip of the slipping zone under mode II crack growth condition have been investigated experimentally and theoretically. A physically reasonable constitutive relation between cohesive stress τ and slip displacement D, τ = (τi − τd)[1 + α log (1 + βD)] exp (−ηD) + τd, is put forward to describe dynamic breakdown processes during earthquake source failure in quantitative terms. In the above equation, τi is the initial shear stress on the verge of slip, τd is the dynamic friction stress, and α, β, and η are constants. This relation is based on the constitutive features during slip failure instabilities revealed in the careful laboratory experiments. These experiments show that the shear stress first increases with ongoing slip during the dynamic breakdown process, the peak stress is attained at a very (usually negligibly) small but nonzero value of the slip displacement, and then the slip‐weakening instability proceeds. The model leads to bounded slip acceleration and stresses at and near the dynamically propagating tip of the slipping zone along the fault in an elastic continuum. The dynamic behavior near the propagating tip of the slipping zone calculated from the theoretical model agrees with those observed during slip failure along the preexisting fault much larger than the cohesive zone. The model predicts that the maximum slip acceleration be related to the maximum slip velocity and the critical displacement Dc by , where k is a numerical parameter, taking a value ranging from 4.9 to 7.2 according to a value of τi/τp (τp being the peak shear stress) in the present model. The model further predicts that be expressed in terms of and the cut off frequency fmaxs of the power spectral density of the slip acceleration on the fault plane as and that in terms of Dc and fmaxs as . These theoretical relations agree well with the experimental observations and can explain interrelations between strong motion source parameters for earthquakes. The pulse width of slip acceleration on the fault plane is directly proportional to the time Tc required for the crack tip to break down, and fmaxs is inversely proportional to Tc.

Human enterovirus species A (HEV-A) consists of at least 16 members of different serotypes that are known to be the causative agents of hand, foot, and mouth disease (HFMD), herpangina, and other diseases, such as respiratory disease and polio-like flaccid paralysis. Enterovirus 71 (EV71) and coxsackievirus A16 (CVA16) are the major causative agents of HFMD. CVA5, CVA6, CVA10, and CVA12 mainly cause herpangina or are occasionally involved with sporadic cases of HFMD. We have previously shown that human scavenger receptor class B, member 2 (SCARB2) is a cellular receptor for EV71 and CVA16. Using a large number of clinical isolates of HEV-A, we explored whether all clinical isolates of EV71 and other serotypes of HEV-A infected cells via SCARB2. We tested this possibility by infecting L-SCARB2 cells, which are L929 cells expressing human SCARB2, by infecting human RD cells that had been treated with small interfering RNAs for SCARB2 and by directly binding the viruses to a soluble SCARB2 protein. We showed that all 162 clinical isolates of EV71 propagated in L-SCARB2 cells, suggesting that SCARB2 is the critical receptor common to all EV71 strains. In addition, CVA7, CVA14, and CVA16, which are most closely related to each other, also utilized SCARB2 for infection. EV71, CVA14, and CVA16 are highly associated with HFMD, and EV71 and CVA7 are occasionally associated with neurological diseases, suggesting that SCARB2 plays important roles in the development of these diseases. In contrast, another group of viruses, such as CVA2, CVA3, CVA4, CVA5, CVA6, CVA8, CVA10, and CVA12, which are relatively distant from the EV71 group, is associated mainly with herpangina. None of these clinical isolates infected via the SCARB2-dependent pathway. HEV-A viruses can be divided into at least two groups depending on the use of SCARB2, and the receptor usage plays an important role in developing the specific diseases for each group.

The complete nucleotide sequence of a novel enteric virus, Aichi virus, associated with nonbacterial acute gastroenteritis in humans was determined. The Aichi virus genome proved to be a single-stranded positive-sense RNA molecule with 8,251 bases excluding a poly(A) tail; it contains a large open reading frame with 7,302 nucleotides that encodes a potential polyprotein precursor of 2,433 amino acids. The genome contains a 5′ nontranslated region (NTR) with 712 bases and a 3′ NTR with 240 bases followed by a poly(A) tail. The structure of the genome, VPg–5′ NTR–leader protein–structural proteins–nonstructural proteins–3′ NTR–poly(A), was found to be typical of a picornavirus. The VP0-VP3 and VP3-VP1 cleavage sites were determined to be Q-H and Q-T, respectively, by N-terminal amino acid sequence analyses using purified virion proteins. Possible cleavage sites, Q-G, Q-A, and Q-S, which cleave P2 and P3 polyproteins were found to be similar to those of picornaviruses. A dendrogram based on 3Dpol proteins indicated that Aichi virus is genetically distinct from the known six genera of picornaviruses including entero-, rhino-, cardio-, aphtho-, and hepatovirus and echovirus 22. Considering this together with other properties of the virus (T. Yamashita, S. Kobayashi, K. Sakae, S. Nakata, S. Chiba, Y. Ishihara, and S. Isomura, J. Infect. Dis. 164:954–957, 1991), we propose that Aichi virus be regarded as a new genus of the family Picornaviridae.

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