The index of biotic integrity (IBI) is a commonly used measure of relative aquatic ecosystem condition; however, its application to coldwater rivers over large geographic areas has been limited. A seven-step process was used to construct and test an IBI applicable to fish assemblages in coldwater rivers throughout the U.S. portion of the Pacific Northwest. First, fish data from the region were compiled from previous studies and candidate metrics were selected. Second, reference conditions were estimated from historical reports and minimally disturbed reference sites in the region. Third, data from the upper Snake River basin were used to test metrics and develop the initial index. Fourth, candidate metrics were evaluated for their redundancy, variability, precision, and ability to reflect a wide range of conditions while distinguishing reference sites from disturbed sites. Fifth, the selected metrics were standardized by being scored continuously from 0 to 1 and then weighted as necessary to produce an IBI ranging from 0 to 100. The resulting index included 10 metrics: number of native coldwater species, number of age-classes of sculpins Cottus spp., percentage of sensitive native individuals, percentage of coldwater individuals, percentage of tolerant individuals, number of alien species, percentage of common carp Cyprinus carpio individuals, number of selected salmonid age-classes, catch per unit effort of coldwater individuals, and percentage of individuals with selected anomalies. Sixth, the IBI responses were tested with additional data sets from throughout the Pacific Northwest. Last, scores from two minimally disturbed reference rivers were evaluated for longitudinal gradients along the river continuum. The IBI responded to environmental disturbances and was spatially and temporally stable at over 150 sites in the Pacific Northwest. The results support its use across a large geographic area to describe the relative biological condition of coolwater and coldwater rivers with low species richness.
Fish assemblages and environmental variables were evaluated from 37 least-disturbed, 1st-through 6th-order streams and springs in the upper Snake River basin, western USA. Data were collected as part of the efforts by the U.S. Geological Survey National Water Quality Assessment Program and the Idaho State University Stream Ecology Center to characterize aquatic biota and associated habitats in least-disturbed coldwater streams. Geographically, the basin comprises four ecoregions. Environmental variables constituting various spatial scales, from watershed characteristics to instream habitat measures, were used to examine distribution patterns in fish assemblages. Nineteen fish species in the families Salmonidae, Cottidae, Cyprinidae, and Catostomidae were collected. Multivariate analyses showed high overlap in stream fish assemblages among the ecoregions. Major environmental factors determining species distributions in the basin were stream gradient, watershed size, conductivity, and percentage of the watershed covered by forest. Lowland streams (below 1,600 m in elevation), located mostly in the Snake River Basin/High Desert ecoregion, displayed different fish assemblages than upland streams (above 2,000 m elevation) in the Northern Rockies, Middle Rockies, and Northern Basin and Range ecoregions. For example, cottids were not found in streams above 2,000 m in elevation. In addition, distinct fish assemblages were found in tributaries upstream and downstream from the large waterfall, Shoshone Falls, on the Snake River. Fish metrics explaining most of the variation among sites included the total number of species, number of native species, number of salmonid species, percent introduced species, percent cottids, and percent salmonids. Springs also exhibited different habitat conditions and fish assemblages than streams. The data suggest that the evolutionary consequences of geographic features and fish species introductions transcend the importance of ecoregion boundaries on fish distributions in the upper Snake River basin.Many rivers and streams in the conterminous terns (Karr 1991). However, before the effects of United States have been degraded as a result of human alterations of streams can be evaluated, binonpoint-source pollutants, fragmentation (i.e., ological criteria for water quality monitoring redams and diversions), habitat alteration, and in-quire data based on least-disturbed or reference troduction of nonnative fish species (Moyle 1986; streams or other suitable historical data (Hughes Heede and Rinne 1990;Allan and Flecker 1993; e t al. 1986;Hayslip 1993). For example, appli-Doppelt et al. 1993;Dynesius and Nilsson 1994). cation of the index of biotic integrity (IBI) depends Human alterations of the physical, chemical, or on reg ional reference site information to score inbiological properties of lode systems usually result dividual fish metrics (Karr 1991) The asses sment in changes in the distribution and structure of fish of fish assemblages in re i at ion to least-disturbed assemblages^ Docume...
The electrofishing distance needed to estimate fish species richness at the stream or river reach scale is an important question in fisheries science. This distance is governed by the shape of the species accumulation curve, which, in turn, is influenced by a combination of factors, including the number of species, their overall abundances, habitat associations, the efficiency of the sampling method, and the occurrence of rare species. In this study we document the influence of rare species on the species accumulation curves from stream and river sites in data sets from five dispersed regions of the USA. Spatial discontinuity (i.e., a noncontinuous distribution within reaches) was observed in four of the five data sets, and the four data sets contained numerically rare species represented by one or two individuals (termed singletons and doubletons, respectively). Numerically rare species were typically proportionately rare (i.e., ,1% of the total number of individuals captured), but proportionately rare species were not always numerically rare and were dependent on the total number of fish captured. Species richness asymptotes were reached at shorter electrofishing distances when singletons and doubletons were removed. The number of singletons and doubletons in the samples remained relatively constant with increasing sampling effort (i.e., sampling distance and total abundance). Simulation modeling indicated that individual aggregation within species was not a plausible reason for spatially discontinuous species distributions. When accurately detecting the presence of species is a sampling goal, the presence and prevalence of numerically rare species may need to be considered in determining sampling protocols.
As part of the U.S. Geological Survey's National Water Quality Assessment Program, fish assemblages, environmental variables, and associated mine densities were evaluated at 18 test and reference sites during the summer of 2000 in the Coeur d'Alene and St. Regis river basins in Idaho and Montana. Multimetric and multivariate analyses were used to examine patterns in fish assemblages and the associated environmental variables representing a gradient of mining intensity. The concentrations of cadmium (Cd), lead (Pb), and zinc (Zn) in water and streambed sediment found at test sites in watersheds where production mine densities were at least 0.2 mines/km 2 (in a 500-m stream buffer) were significantly higher than the concentrations found at reference sites. Many of these metal concentrations exceeded Ambient Water Quality Criteria (AWQC) and the Canadian Probable Effect Level guidelines for streambed sediment. Regression analysis identified significant relationships between the production mine densities and the sum of Cd, Pb, and Zn concentrations in water and streambed sediment (r 2 ϭ 0.69 and 0.66, respectively; P Ͻ 0.01). Zinc was identified as the primary metal contaminant in both water and streambed sediment. Eighteen fish species in the families Salmonidae, Cottidae, Cyprinidae, Catostomidae, Centrarchidae, and Ictaluridae were collected. Principal components analysis of 11 fish metrics identified two distinct groups of sites corresponding to the reference and test sites, predominantly on the basis of the inverse relationship between percent cottids and percent salmonids (r ϭ Ϫ0.64; P Ͻ 0.05). Streams located downstream from the areas of intensive hard-rock mining in the Coeur d'Alene River basin contained fewer native fish and lower abundances as a result of metal enrichment, not physical habitat degradation. Typically, salmonids were the predominant species at test sites where Zn concentrations exceeded the acute AWQC. Cottids were absent at these sites, which suggests that they are more severely affected by elevated metals than are salmonids.
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