The objective of this study was to monitor the quality of ground water supplied to animal farms and 2 villages and of surface water (rivers) in the same area (Košice basin, eastern Slovakia) with the aim to assess contamination of water by potential sources in this area. Samples for physico-chemical and microbiological examination were collected at 12 sampling points (6-surface water; 6-ground water) from May 2014 up to March 2015, covering all four seasons. The examination and evaluation of individual parameters was carried out according to relevant Slovak legislation compatible with EU Drinking water directive. The physico-chemical evaluation focused on parameters that indicate pollution of water resulting from human activities and farming. Microbiological examination included determination of counts of bacteria cultivated at 22 • C and 37 • C (BC22 and BC37), total coliforms, E. coli and fecal streptococci. Ground water intended for mass consumption (farms, villages) is abstracted from wells, collected in storage reservoirs and disinfected before brought to consumers. Some families in the villages use their own wells. Water for individual consumption (individual households) originates directly from individual wells. Examination of potable water used on agricultural farms showed some possibility of contamination of sources by runoff and inappropriate manipulation with excrements. Surface water in in the area close to both farms was polluted with organic substances (COD Mn ), however they did not exceed the limit set for surface water. At many samplings we detected in surface water presence of total coliforms, E. coli and occasionally also fecal enterococci indicating fecal pollution that could eventually affect ground water in individual wells. Our investigations showed that protection zones of water sources were not always sufficient. There were considerable variations in the quality of surface water during the year but no clear relationship between microbial contamination and seasons was observed. Quality of ground water supplied for mass consumption complied with legislative regulations except for BC 22 (heterotrophic count at 22 • C) in summer and autumn). Water from individual wells contained occasionally presence of total coliforms, E. coli and enterococci and higher heterotrophic counts.

The study investigated the risks arising from application of pig slurry to soil in relation to viability of Salmonella typhimurium, Escherichia coli, total coliforms, faecal enterococci and eggs of Ascaris suum at different temperatures. Potential effect of changes in physico-chemical parameters, particularly dry matter (DM), pH and ammonia, were also investigated. Examination showed that S. typhimurium was devitalised after storage in the slurry for 115 days at 4 °C and after 90 days at 20 and 42 °C. Devitalization of E. coli and faecal entrerococci required more than 115 at temperature of 4 °C and faecal enterococci were recovered from slurry after 115 days of storage even at temperature of 20 °C. Total coliforms survived for 115 days at all investigated temperatures. Complete devitalization of A. suum eggs was not achieved even after 115 days at 42 °C. Our investigations indicated potential microbial and parasitic risk related to application of pig slurry to soil even after 115 days of storage.

Antibiotic resistance of the indicator microorganism Escherichia coli was investigated in isolates from samples collected during the course of one year from two wastewater treatment plants treating municipal and animal wastes in Slovakia, respectively. The genes of antibiotic resistance and virulence factors in selected resistant E. coli isolates were described. A high percentage of the isolates from municipal and animal wastewater were resistant to ampicillin, streptomycin, tetracycline, ceftiofur, ceftriaxone, and enrofloxacin. In the selected E. coli isolates, we detected the following phenotypes: ESBL (20.4% in animal wastewater; 7.7% in municipal wastewater), multidrug-resistant (17% of animal and 32% of municipal isolates), high resistance to quinolones (25% of animal and 48% of municipal samples), and CTX-M (7.9% of animal and 17.3% of municipal isolates). We confirmed an integro-mediated antibiotic resistance in 13 E. coli strains from municipal and animal wastewater samples, of which the Tn3 gene and virulence genes cvaC, iutA, iss, ibeA, kps, and papC were detected in six isolates. One of the strains of pathogenic E. coli from the animal wastewater contained genes ibeA with papC, iss, kpsII, Int1, Tn3, and Cit. In addition, one blaIMP gene was found in the municipal wastewater sample. This emphasises the importance of using the appropriate treatment methods to reduce the counts of antibiotic-resistant microorganisms in wastewater effluent.

Wastewater and wastewater treatment plants serve as urban reservoirs of pathogenic microorganisms. Wastewaters frequently contain bacteria, antibiotic-resistant bacteria, and developmental stages of parasites with significant zoonotic potential. Five wastewater treatment plants in the central part of Slovakia were investigated to determine the effect of treatment on bacterial community, antibiotic-resistant bacteria, and the occurrence of helminth eggs. Although all monitored chemical factors (chemical oxygen demand, biochemical oxygen demand, N-NH4, total nitrogen, and total phosphorus) in the effluent were in line with the legislative standards for discharge into public waterways, the results of minimal inhibitory concentrations show that reclaimed water harbors E. coli resistant to several commonly used antibiotics (ampicillin, piperacillin, and tazobactam, combine ampicillin and sulbactam, cefotaxime, tetracycline). The presence of endoparasite developmental stages in wastewater and sludge (Ascaris spp., Hymenolepis nana, eggs from the Ancylostomatidae family, Giardia duodenalis) indicates potential health risks for humans and workers at these sites. Treatment such as composting before applying sludge to land is necessary to reduce human pathogens.