Acidithiobacillus ferrivorans is an acidophile that often occurs in low temperature acid mine drainage, e.g., that located at high altitude. Being able to inhabit the extreme environment, the bacterium must possess strategies to copy with the survival stress. Nonetheless, information on the strategies is in demand. Here, genomic and transcriptomic assays were performed to illuminate the adaptation mechanisms of an A. ferrivorans strain YL15, to the alpine acid mine drainage environment in Yulong copper mine in southwest China. Genomic analysis revealed that strain has a gene repertoire for metal-resistance, e.g., genes coding for the mer operon and a variety of transporters/efflux proteins, and for low pH adaptation, such as genes for hopanoid-synthesis and the sodium:proton antiporter. Genes for various DNA repair enzymes and synthesis of UV-absorbing mycosporine-like amino acids precursor indicated hypothetical UV radiation—resistance mechanisms in strain YL15. In addition, it has two types of the acquired immune system–type III-B and type I-F CRISPR/Cas modules against invasion of foreign genetic elements. RNA-seq based analysis uncovered that strain YL15 uses a set of mechanisms to adapt to low temperature. Genes involved in protein synthesis, transmembrane transport, energy metabolism and chemotaxis showed increased levels of RNA transcripts. Furthermore, a bacterioferritin Dps gene had higher RNA transcript counts at 6°C, possibly implicated in protecting DNA against oxidative stress at low temperature. The study represents the first to comprehensively unveil the adaptation mechanisms of an acidophilic bacterium to the acid mine drainage in alpine regions.

Our knowledge on the dissolution and passivation mechanisms of chalcopyrite during bioleaching at low temperature has been limited to date. In this study, an Acidithiobacillus ferrivorans strain with high tolerance to heavy metals and UV radiation was used for chalcopyrite bioleaching. At 6 • C, no apparent precipitate was detected on the mineral surface after bioleaching using a scanning electron microscope (SEM). X-ray diffraction (XRD) revealed that the ore residue contained only chalcopyrite and quartz. X-ray photoelectron spectroscopy (XPS) analysis revealed that the content of S 0 on the mineral surface remained low and the ratio of SO 4 2− decreased from 46.7% to 20.9%, but the amount of S n 2− increased from 10.4% to 21.4% after bioleaching. Expression of five critical iron-and sulfur-oxidation genes during bioleaching was analyzed using quantitative real-time PCR. The gene rusA had higher expression in the mid-log phase than in the stationary phase but hdrA and cyoC1 showed an opposite trend. All genes had higher expression at 6 • C than at 28 • C, so as to compensate for the decline in the enzyme activities. The study revealed that polysulfide was the most plausible passivating substance at 6 • C, and the strain can maintain the iron-and sulfur-oxidation activities during low-temperature bioleaching.

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Two novel acidothermophilic archaea, strains Ric-A T and Ric-F, were isolated from muddy water samples of a sulfuric hot spring located in Tengchong County, Yunnan Province, PR China. The strains were aerobic and facultatively chemolithoautotrophic. Both strains could oxidize S 0 and K 2 S 4 O 6 for autotrophic growth, and could use organic materials for heterotrophic growth. Growth was observed at 55-75 6C and pH 1.5-6.5. The strains could oxidize metal sulfide ores, showing their potential in bioleaching. The DNA G+C contents of strains Ric-A T and Ric-F were 41.8 and 41.6 mol%, respectively. Analysis of 16S rRNA gene sequences showed that the two strains shared 99.8 % sequence similarity to each other, but ,97 % to other known species of the genus Metallosphaera. DNA-DNA hybridization indicated that the isolates were different strains of a novel species of the genus Metallosphaera. Strains Ric-A T and Ric-F also shared a number of physiological and biochemical characteristics that distinguished them from recognized species of the genus Metallosphaera. On the basis of phenotypic, chemotaxonomic and phylogenetic comparisons with their closest relatives, it was concluded that strains Ric-A T and Ric-F represent a novel species of the genus Metallosphaera, for which the name Metallosphaera tengchongensis sp. nov. is proposed. The type strain is Ric-A T (5NBRC 109472 T 5CGMCC 1.12287 T).