Purpose – The purpose of this paper is to outline the present status of various fermented foods and beverages across the globe and reviews on the microbiology and therapeutic effects of fermented foods. Design/methodology/approach – Fermented foods play an important socio-economic role in developing countries as well as making a major contribution to the nutrition requirements of natural populations. These foods have attracted attention all over the world as foods that might promote longevity. The approach is based on observations of online research with respect to fermented foods and their origins, analysis of research papers in journals and systematic research on the microbiology and health benefits of fermented products. Findings – In general, traditional fermented foods produced with indigenous practices throughout the world are made under primitive conditions, which result in low yield and poor quality. But since, these foods are not only traditional but also functional foods. They are experiencing a burst of popularity as health foods worldwide. The raw materials traditionally used for fermentation are as diverse as: fruits, cereals, vegetables, milk, meat, and fish. It is possible to obtain a large variety of different food products by selecting different raw materials, starter cultures, and fermentation conditions. Originality/value – The paper offers a holistic view that would guide a reader to identify various fermented products and enlighten them about their therapeutic properties.

Caldicellulosiruptor bescii, the most thermophilic cellulolytic bacterium, is rich in hydrolytic and accessory enzymes that can degrade untreated biomass, but the precise role of many these enzymes is unknown. One of such enzymes is a predicted GDSL lipase or esterase encoded by the locus Athe_0553. In this study, this probable esterase named as Cbes-AcXE2 was overexpressed in Escherichia coli. The Ni-NTA affinity purified enzyme exhibited an optimum pH of 7.5 at an optimum temperature of 70 °C. Cbes-AcXE2 hydrolyzed p-nitrophenyl (pNP) acetate, pNP-butyrate, and phenyl acetate with approximately equal efficiency. The specific activity and K for the most preferred substrate, phenyl acetate, were 142 U/mg and 0.85 mM, respectively. Cbes-AcXE2 removed the acetyl group of xylobiose hexaacetate and glucose pentaacetate like an acetyl xylan esterase (AcXE). Bioinformatics analyses suggested that Cbes-AcXE2, which carries an SGNH hydrolase-type esterase domain, is a member of an unclassified carbohydrate esterase (CE) family. Moreover, Cbes-AcXE2 is evolutionarily and biochemically similar to an unclassified AcXE, Axe2, of Geobacillus stearothermophilus. Thus, we proposed a novel family of carbohydrate esterase for both Cbes-AcXE2 and Axe2.

Lipases, also known as triacylglycerol hydrolases (E.C. No. 3.1.1.3), are considered as leading biocatalysts in the lipid modification business. With properties like ease of availability, capability to work in heterogeneous media, stability in organic solvents, property of catalyzing at the lipid-water interface and even in nonaqueous conditions, have made them a versatile choice for applications in the food, flavor, detergent, pharmaceutical, leather, textile, cosmetic, and paper industries [1]. The increasing alertness toward sustainable technologies, lesser waste generation and solvent usage and minimization of energy input has brought light toward the production and usage of recombinant/improved lipases. For example, Novozym 435, a broadly used recombinant lipase isolated from Candida antarctica, dominates the lipase industry and has even created a supplier bias in the market. This shows that there is a desperate need for novel, low-cost lipases with better properties. For this, mining of existing extremophilic genomes seems more rewarding. But considering the diversity of industrial requirements such as types of solvents used or carrier systems employed for enzyme immobilization, tailor-designed enzymes are an unrealized pressing priority. Therefore, protein engineering strategies in collaboration with the discovery of new lipases can serve as a vital tool to obtain tailor-made enzymes with specific characteristics.

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Background Lipolytic enzymes of hyperthermophilic archaea generally prefer small carbon chain fatty acid esters (C 2 –C 12 ) and are categorized as esterases. However, a few have shown activity with long-chain fatty acid esters, but none of them have been classified as a true lipase except a lipolytic enzyme AFL from Archaeglobus fulgidus . Thus, our main objective is to engineer an archaeal esterase into a true thermostable lipase for industrial applications. Lipases which hydrolyze long-chain fatty acid esters display an interfacial activation mediated by the lid domain which lies over active site and switches to open conformation at the oil–water interface. Lid domains modulate enzyme activities, substrate specificities, and stabilities which have been shown by protein engineering and mutational analyses. Here, we report engineering of an uncharacterized monoacylglycerol lipase (TON-LPL) from an archaeon Thermococcus onnurineus (strain NA1) into a triacylglycerol lipase (rc-TGL) by replacing its 61 N-terminus amino acid residues with 118 residues carrying lid domain of a thermophilic fungal lipase— Thermomyces lanuginosus (TLIP). Results TON-LPL and rc-TGL were cloned and overexpressed in E. coli, and the proteins were purified by Ni–NTA affinity chromatography for biochemical studies. Both enzymes were capable of hydrolyzing various monoglycerides and shared the same optimum pH of 7.0. However, rc-TGL showed a significant decrease of 10 °C in its optimum temperature (T opt ). The far UV–CD spectrums were consistent with a well-folded α/β-hydrolase fold for both proteins, but gel filtration chromatography revealed a change in quaternary structure from trimer (TON-LPL) to monomer (rc-TGL). Seemingly, the difference in the oligomeric state of rc-TGL may be linked to a decrease in temperature optimum. Nonetheless, rc-TGL hydrolyzed triglycerides and castor oil, while TON-LPL was not active with these substrates. Conclusions Here, we have confirmed the predicted esterase activity of TON-LPL and also performed the lid engineering on TON-LPL which effectively expanded its substrate specificity from monoglycerides to triglycerides. This approach provides a way to engineer other hyperthermophilic esterases into industrially suitable lipases by employing N-terminal domain replacement. The immobilized preparation of rc-TGL has shown significant activity with castor oil and has a potential application in castor oil biorefinery to obtain value-added chemicals. Electronic supplementary material The online version of this article (10.1186/s13068-019-1452-5) contains supplementary material, which is available to authorized users.

Statistical optimization using industrial rice-straw hydrolysate (C6 stream) containing 5.0% total sugars was carried out for enhancing the rhamnolipid production from Achromobacter sp.(PS1) with subsequent adoption of a sequential fermentation approach with fill-and-draw operation for further increment. The interactive effects of six influential variables obtained from one-factor-at-a-time approach as sodium nitrate, yeast extract, ferrous sulphate, phosphate concentrations and agitation in presence of lignocellulosic hydrolyzed sugars as a basal medium using central composite design revealed the experimental rhamnolipid yield of 5.46 g/L at optimum conditions of total sugars 40 g/L (w/v), sodium nitrate 6.0 (g/L), yeast extract 2 (g/L), ferrous sulphate 0.2 (mg/L) and phosphate 1000mM at 100 rpm at 30°C in 8 days. The sequential approach further resulted in an overall yield of 19.35 g/L of rhamnolpid in five sequential-cycles with an increase of 258% over the batch process on account of nutrients replenishment and dilution of toxic by-products.

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In today’s bio-based industry, lipase-catalyzed processes hold eminent commercial worth, yet their use is restricted owing to low yields, high production cost, inconsistent reproducibility, and poor performance in native form. Cloning and expression of multiple lipase genes in various systems have been investigated in order to produce enzymes for the food and detergent industries more cheaply since the development of recombinant DNA technology. The identification of novel lipases is still hampered by the rather difficult expression of these enzymes. The expression of lipases still requires a case-to case optimization. However, the unbiased choice of the appropriate promoter system and host for a specific protein of interest remains difficult. Here, we concisely expressed TLIP (Lipase from Thermomyces lanuginosus; mainly used in the detergent industry) in the frequently used conventional and alternative host systems, with their unique features, along with different promoters (T5, T7, aprE and hp4d) to produce recombinant products. Screening of expression was done among both prokaryotic ( Escherichia coli, Bacillus subtilis) and eukaryotic ( Yarrowia lipolytica) hosts consisting of both intracellular and secretory expression. E. coli (BL21 Shuffle) and Y. lipolytica (extracellular) were found to be the best expression systems for lipase production.