Although the overall structure of the chloroplast genome is generally conserved, several sequence variations have been identified that are valuable for plant population and evolutionary studies. Here, we constructed a chloroplast variation map of 30 landrace rice strains of Korean origin, using the Oryza rufipogon chloroplast genome (GenBank: ) as a reference. Differential distribution of single‐nucleotide polymorphisms and INDELs across the rice chloroplast genome is suggestive of a region‐specific variation. Population structure clustering revealed the existence of two clear subgroups (indica and japonica) and an admixture group (aus). Phylogenetic analysis of the 30 landrace rice strains and six rice chloroplast references suggested and supported independent evolution of O. sativa indica and japonica. Interestingly, two aus type accessions, which were thought to be indica type, shared a closer relationship with the japonica type. One hypothesis is that ‘Korean aus’ was intentionally introduced and may have obtained japonica chloroplasts during cultivation. We also calculated the nucleotide diversity of 30 accessions and compared the results to six rice chloroplast references. These data demonstrated that although nucleotide diversity is low in all strains tested, aus and indica have a higher nucleotide diversity than japonica.
To observe the possibility of producing haploid plants of Chrysanthemum, anthers of three Korean cultivars ‘Yes Morning’, ‘Hi-Maya’, and pot cultivar ‘Peace Pink’ were cultured. Callus induction among cultivars differed little, but equally good results were obtained with the basal MS medium supplemented with 1 mg/L of 2,4-D, 2 mg/L of BA, 250 mg/L of casein hydrolysate, 45 g/L of sucrose; solidified by 2.75 g/L gelrite. A pretreatment of anthers in media at 4 °C for 48h enhanced the callus induction. Calli were allowed to differentiate on basal MS medium supplemented with 2 mg/L of BA, 0.1 mg/L of NAA, 30 g/L of sucrose; solidified by 2.75 g/L gelrite. Shoot formation from calli in that media slightly differed among cultivars. Multiple shoots elongated from calli were shifted to basal MS medium supplemented with 0.1 mg/L of NAA, 30 g/L of sucrose; solidified by 3 g/L gelrite for rooting. The plantlets with sufficient roots thus obtained were acclimatized and transferred to the soil. Fifty regenerated plantlets from each cultivar were randomly selected for ploidy observation by chromosome counting and haploid plantlet was detected for the garden cultivar ‘Yes morning’.
To observe the possibility of producing haploid plants of Chrysanthemum, anthers of three Korean cultivars 'Yes Morning', 'Hi-Maya', and pot cultivar 'Peace Pink' were cultured. Callus induction among cultivars differed little, but equally good results were obtained with the basal MS medium supplemented with 1 mg/L of 2,4-D, 2 mg/L of BA, 250 mg/L of casein hydrolysate, 45 g/L of sucrose; solidified by 2.75 g/L gelrite. A pretreatment of anthers in media at 4 °C for 48h enhanced the callus induction. Calli were allowed to differentiate on basal MS medium supplemented with 2 mg/L of BA, 0.1 mg/L of NAA, 30 g/L of sucrose; solidified by 2.75 g/L gelrite. Shoot formation from calli in that media slightly differed among cultivars. Multiple shoots elongated from calli were shifted to basal MS medium supplemented with 0.1 mg/L of NAA, 30 g/L of sucrose; solidified by 3 g/L gelrite for rooting. The plantlets with sufficient roots thus obtained were acclimatized and transferred to the soil. Fifty regenerated plantlets from each cultivar were randomly selected for ploidy observation by chromosome counting and haploid plantlet was detected for the garden cultivar 'Yes morning'.
Jinsang' is a new japonica rice variety was derived from a cross between 'Yumetsukushi' as a high grain quality and 'Milky queen' with low amylose content and good eating quality in 2000, and selected by pedigree breeding method until M8 generation. As a result, a promising line, JCH33M-15-1-9-1-5-1-1-1, was advanced and designated as the name of 'HJ-2' in 2009. This variety has about 111 days to heading after sowing and has 75.2 cm culm height. Milled rice of that shows dull and medium short grain and 1,000-grain weight was about 20.9 g. It has low amylose content of 11.9% and lower protein content of 6.8%. The yield potential of 'Jinsang' in brown rice was about 4.57 MT/ha by ordinary culture in replicated yield trial test.
Sesame is queen of oil seed crops and widely cultivated in Asia and Africa. The aim of this study was to develop a mini sub core set representing the diverse germplasm of sesame and to assess the genetic diversity, population structure and phylogenetic relationship of the resulted sub core set to be used in whole genome resequencing platform. One hundred twelve accessions out of 277 accessions were selected by the PowerCore program. A total of 155 alleles were captured from the 158 alleles detected in the primary core population, and rare alleles and specific alleles were also maintained in the sub core set accessions representing almost 100% of the primary core population. Among the sub core set accessions, four sub populations were observed with some admixture accessions. Although the genetic diversity of Pop-1 which includes most accessions from Korea is relatively lower than that of other three sub populations, it can maintain maximum number of accessions in the sub core set with the same percentage as in the primary core set probably because of the specific features of these accessions. Based on this framework of genetically defined populations, the effective use and conservation management of Sesamum indicum for crop improvement might be possible.
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