Salmon farming increases the abundance of salmon lice, which are ectoparasites of salmonids in the sea. Here we review the current knowledge on the effects of salmon lice on wild sea trout. Salmon lice feed on host mucus, skin and muscle, and infestation may induce osmoregulatory dysfunction, physiological stress, anaemia, reduced feeding and growth, increased susceptibility to secondary infections, reduced disease resistance and ultimately mortality of individual sea trout. Wild sea trout in farm-free areas generally show low lice levels. In farm-intensive areas, lice levels on wild sea trout are typically higher, and more variable than in farm-free areas. Lice on wild sea trout are found at elevated levels particularly within 30 km of the nearest farms but can also extend to further ranges. Salmon lice in intensively farmed areas have negatively impacted wild sea trout populations by reducing growth and increasing marine mortality. Quantification of these impacts remains a challenge, although population-level effects have been quantified in Atlantic salmon by comparing the survival of chemically protected fish with control groups, which are relevant also for sea trout. Mortality attributable to salmon lice can lead to an average of 12−29% fewer salmon spawners. Reduced growth and increased mortality will reduce the benefits of marine migration for sea trout, and may also result in selection against anadromy in areas with high lice levels. Salmon lice-induced effects on sea trout populations may also extend to altered genetic composition and reduced diversity, and possibly to the local loss of sea trout, and establishment of exclusively freshwater resident populations.

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The Hardangerfjord, western Norway, is an area with a high concentration of salmon farms, high levels of infection of salmon lice in anadromous brown trout, and declining trout populations. This study assessed the marine survival rate of anadromous trout from the River Guddalselva, in the central part of the fjord, and tested the hypothesis that trout populations in this area are depressed by salmon lice infection. From 2001 to 2011, all descending smolts and trout returning from the fjord were captured in the traps at the field station of the Institute of Marine Research. In 2004 and 2005, parts of the smolt cohorts were treated with the Substance EX to prevent sea lice infection. From 2007 to 2010, all smolts (n 03557) were also tagged with individual tags. The results show a survival rate in the sea of only 0.58Á3.41% for tagged smolts, which is extremely low. The highest survival rates appeared in the years with the lowest recordings of salmon lice in spring. The survival rate of Substance EX-treated smolts and controls was 3.41% and 1.76%, respectively. These findings suggest that salmon lice infection is an important contributor to the high mortality of anadromous trout populations in the Hardangerfjord.

Understanding migratory patterns is important for predicting and mitigating unwanted consequences of environmental change or anthropogenic challenges on vulnerable species. Wild Atlantic salmon undergo challenging migrations between freshwater and marine environments, and the numbers of salmon returning to their natal rivers to reproduce have declined over several decades. Mortality from sea lice linked to fish farms within their seaward migration routes is proposed as a contributing factor to these declines. Here, we used 31 microsatellite markers to establish a genetic baseline for the main rivers in the Hardangerfjord, western Norway. Mixed stock analysis was used to assign Atlantic salmon post-smolts caught in trawls in 2013–2017 back to regional reporting units. Analyses demonstrated that individuals originating from rivers located in the inner region of the fjord arrived at the outer fjord later than individuals from middle and outer fjord rivers. Therefore, as post-smolts originating from inner rivers also have to migrate longer distances to exit the fjord, these data suggest that inner fjord populations are more likely to be at risk of mortality through aquaculture-produced sea lice, and other natural factors such as predation, than middle or outer fjord populations with earlier exit times and shorter journeys. These results will be used to calibrate models estimating mortality from sea lice on wild salmon for the regulation of the Norwegian aquaculture industry.