Genetics has been widely used in insect ecology and conservation. To minimise the effect of DNA sampling on organisms as much as possible, it would be ideal to use non‐invasive or non‐lethal DNA sources. Therefore, it is also very important to determine the responses of organisms to DNA sampling. In this study, the quality and quantity of genomic DNA samples from three types of insect tissues (exuvia, mid‐legs and wings) were evaluated. As model organisms, we used two dragonfly species of different sizes (Leucorrhinia dubia, Anax imperator). We also tested the regenerative ability of dragonfly larvae as a repair mechanism after mid‐leg cut‐off, with respect to factors such as size and quantity of diet. We found that DNA of sufficient quality for analyses was obtained from all tested tissues. Nonetheless, isolates from exuviae were conclusively less useful for sequencing than those from the mid‐legs and wings. The highest quantity of DNA was obtained from the mid‐legs. The survival of larvae is not affected by removing the legs, which can usually regenerate. All the tested tissues could be a source of adequate DNA; however, we concluded that primarily the legs should be used because they provided the best DNA samples in terms of quantity and quality of DNA. Furthermore, their exploitation would not affect individuals seriously if young larvae with sufficient time (at least 6 months) for regeneration are sampled. The exuviae should be used for absolutely non‐invasive studies involving endangered or protected species.
The use of mitochondrial markers for taxonomic identification and biodiversity monitoring is not without risks or limitations. Most importantly, the natural transfer of DNA from the mitochondria to the nucleus generates nonfunctional nuclear copies of mitochondrial DNA (NUMTs). Their abundance and size vary significantly among taxa, and NUMTs have been reported to complicate molecular studies based on mitochondrial markers in several insect orders, most prominently in Orthoptera. The significance of this phenomenon in Odonata has not yet been properly addressed. Here, we present a complete mitochondrial genome and a draft nuclear genome of Leucorrhinia albifrons (Odonata: Libellulidae), as well as NUMT and cox1 sequences from the related species Leucorrhinia dubia. We document the presence of NUMTs in the L. albifrons nuclear genome and in nuclear genomes of two other Odonata species available in public databases. Our results show that NUMTs can have a serious impact on barcoding, phylogenetic, population and phylogeographic studies of Odonata, especially when the barcode is located in the cox1 gene, the most frequently used molecular marker for Odonata. We suggest that nad1 should be used alone or in combination with cox1 to minimize unintended confusion with NUMTs. Finally, we present a mitophylogenomic analysis of Odonata and document several cases of misidentified mitochondrial genomes belonging to species different from those indicated in public databases. In conclusion, our findings represent an important step for future metabarcoding studies of Odonata based on mitochondrial DNA markers.
Understanding the impact of the changing proportion of land-use patterns on species diversity is a critical issue in conservation biology, and odonates are good bioindicators of these environmental changes. Some freshwater ecosystems that have been modified due to human activities can serve as important secondary habitats for odonate assemblages; however, the majority of studies addressing the value of secondary habitats in industrial and urban areas for adult dragonfly diversity have been limited to the local scale, and the value of such habitats for gamma diversity is still unclear. The aim of this study was to determine the relationship between human transformations of land use/land cover and dragonfly diversity. We interpolated the information based on dragonfly occurrence per grid cell and land cover data, indicating naturalness and degradation in 677 grid cells in the Czech Republic. Species richness did not correspond to habitat naturalness, but the occurrence of endangered species was significantly positively correlated with increasing naturalness; thus, habitat degradation and/or the level of naturalness significantly affected species composition, while species richness remained unchanged. Threatened species that occur predominantly in natural areas and threatened species with a dominant occurrence in degraded squares were also separated, which indicated that the conservation of the latter should be prioritised.
Citizen science and data collected from various volunteers have an interesting potential in aiding the understanding of many biological and ecological processes. We describe a mobile application that allows the public to map and report occurrences of the odonata species (dragonflies and damselflies) found in the Czech Republic. The application also helps in species classification based on observation details such as date, GPS coordinates, and the altitude, biotope, suborder, and colour. Dragonfly Hunter CZ is a free Android application built on the open-source framework NativeScript using the JavaScript programming language which is now fully available on Google Play. The server side is powered by Apache Server with PHP and MariaDB SQL database. A mobile application is a fast and accurate way to obtain data pertaining to the odonata species, which can be used after expert verification for ecological studies and conservation basis like Red Lists and policy instruments. We expect it to be effective in encouraging Citizen Science and in promoting the proactive reporting of odonates. It can also be extended to the reporting and monitoring of other plant and animal species.
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