Molecular dynamics (MD) simulations, stochastic optical reconstruction microscopy (STORM) and neutron reflection (NR) are combined to explore how antimicrobial peptides (AMPs) can be designed to promote the formation of nanoaggregates into bacterial membranes and impose effective bactericidal actions. Changes in the hydrophobicity of the designed AMPs were found to have strong influence on their bactericidal potency and cytotoxicity. G(IIKK) 3 I-NH 2 (G 3 ) achieved low minimum inhibition concentrations (MICs) and effective dynamic kills against both antibiotic resistant and susceptible bacteria. However, a G 3 derivative with weaker hydrophobicity, KI(KKII) 2 I-NH 2 (KI), exhibited considerably lower membrane-lytic activity. In contrast, the more hydrophobic G(ILKK) 3 L-NH 2 (GL) peptide achieved MICs similar to those observed for G 3 , but with worsened haemolysis. Both the model membranes studied by Brewster angle microscopy, Zeta-potential measurements and NR, and the real bacterial membranes examined with direct STORM, contained membrane inserted peptide aggregates upon AMP exposure. These structural features were well supported by MD simulations. By revealing how AMPs self-assemble in microbial membranes, this work provides important insights into their mechanistic actions and allows further fine-tuning of antimicrobial potency and cytotoxicity.

The production of Escherichia coli K1 serotype capsule was investigated using direct stochastic optical reconstruction microscopy with live bacteria and graphene oxide-coated coverslips, overcoming many morphological artifacts found in other high-resolution imaging techniques. Super-resolution fluorescence images showed that the K1 capsular polysaccharide is not uniformly distributed on the cell surface, as previously thought. These studies demonstrated that on the cell surfaces the K1 capsule at the poles had bimodal thicknesses of 238 ± 41 and 323 ± 62 nm, whereas at the equator, there was a monomodal thickness of 217 ± 29 nm. This bimodal variation was also observed in high-pressure light-scattering chromatography measurements of purified K1 capsular polysaccharide. Particle tracking demonstrated that the formation of the capsule was dominated by the expansion of lyso-phosphatidylglycerol (lyso-PG) rafts that anchor the capsular polysaccharide in the outer membrane, and the expansion of these rafts across the cell surface was driven by new material transported through the capsular biosynthesis channels. The discovery of thicker capsules at the poles of the cell will have implications in mediating interactions between the bacterium and its immediate environment.

Quenched Stochastic Optical Reconstruction Microscopy (qSTORM) was demonstrated with graphene oxide sheets, peptides and bacteria; a method of contrast enhancement with super-resolution fluorescence microscopy. Individual sheets of graphene oxide (GO) were imaged with a resolution of 16 nm using the quenching of fluorescence emission by GO via its large Resonant Energy Transfer (RET) efficiency. The method was then extended to image self-assembled peptide aggregates (resolution 19 nm) and live bacterial cells (resolution 55 nm, the capsular structure of E. coli from urinary tract infections) with extremely low backgrounds and high contrasts (between one and two orders of magnitude contrast factor improvements that depended on the thickness of the graphene oxide layer used). Graphene oxide films combined with STORM imaging thus provide an extremely convenient method to image samples with large backgrounds due to non-specifically bound fluorophores (either due to excess labelling or autofluorescent molecules), which is a common occurrence in studies of both biological cells and soft-condensed matter. The GO quenches the fluorescence across a thin layer at distances of less than 15 nm. Graphene oxide films coated with thin layers (≤15 nm) of polystyrene, polymethylmethacrylate and polylysine are shown to be effective in producing high contrast qSTORM images, providing a convenient modulation of sample/substrate interactions. The GO coatings can also provide an increased image resolution and a factor of 2.3 improvement was observed with the peptide fibres using a feature of interest metric,when there was a large non-specifically bound background.

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Ion transport is a significant concept that underlies a variety of technologies including membrane technology, energy storages, optical, chemical, and biological sensors and ion-mobility exploration techniques. These applications are based on the concepts of capacitance and ion transport, so a prior understanding of capacitance and ion transport phenomena is crucial. In this review, the principles of capacitance and ion transport are described from a theoretical and practical point of view. The review covers the concepts of Helmholtz capacitance, diffuse layer capacitance and space charge capacitance, which is also referred to as quantum capacitance in low-dimensional materials. These concepts are attributed to applications in the electrochemical technologies such as energy storage and excitable ion sieving in membranes. This review also focuses on the characteristic role of channel heights (from micrometer to angstrom scales) in ion transport. Ion transport technologies can also be used in newer applications including biological sensors and multifunctional microsupercapacitors. This review improves our understanding of ion transport phenomena and demonstrates various applications that is applicable of the continued development in the technologies described.