No abstract

BackgroundThe assembly and annotation of a genome is a valuable resource for a species, with applications ranging from conservation genomics to gene discovery. Genomic resource development is especially important for species in culture, such as the California Yellowtail (Seriola dorsalis), the likely candidate for the establishment of commercial offshore aquaculture production in southern California. Genomic resource development for this species will improve the understanding of sex and other phenotypic traits, and allow for rapid increases in genetic improvement for and economic gain in culture production.ResultsWe describe the assembly and annotation of the S. dorsalis genome, and present resequencing data from 45 male and 45 female wild-caught S. dorsalis used to identify a sex-determining region and marker in this species. The genome assembly captured approximately 93% of the total 685 MB genome with an average coverage depth of 180×. Using the assembled genome, resequencing data from the 90 fish were aligned to place boundaries on the sex-determining region. Sex-specific markers were developed based on a female-specific, 61 nucleotide deletion identified in that region. We hypothesize that Estradiol 17-beta-dehydrogenase is the putative sex-determining gene and propose a plausible genetic mechanism for ZW sex determination in S. dorsalis involving a female-specific deletion of a transcription factor binding motif that may be targeted by Sox3.ConclusionsUnderstanding the mechanism of sex determination and development of assays to determine sex is critical both for management of wild fisheries and for development of efficient and sustainable aquaculture practices. In addition, this genome assembly for S. dorsalis will be a substantial resource for a variety of future research applications.Electronic supplementary materialThe online version of this article (10.1186/s12864-017-4403-1) contains supplementary material, which is available to authorized users.

No abstract

No abstract

No abstract

Catch data of the yellowfin tuna (YFT) fishery were used to study the relationship between the seasonal and spatial variations of YFT with or without the presence of mesoscale structures at the entrance to the Gulf of California (19º–24º N, 104º–112º W). The YFT catches were distributed mainly over the continental shelf and around islands and seamounts. High concentration sets of YFT occurred throughout the year around the Marías islands and Cabo Corrientes, particularly in March and June. A warm (>28ºC) coastal jet with a width of 1.5 Rossby radius (~20.6 km) was observed off Cabo Corrientes during February and April, covering all the continental shelf off Cabo Corrientes. The jet moved at an average speed of 0.31 m s–1 and extended northwards to the Roca Corbetera seamount. The interaction with cooler water generated a frontal zone around which the YFT catches were concentrated. In contrast, during March the wind field was more favorable for the development of coastal upwelling off Cabo Corrientes. We observed an upwelling region with sea surface temperature of 18ºC and an offshore width of about a 3.7 Rossby radius of cold water that covered some 2600 km2. The YFT catches occurred in warmer water north of the upwelling zone.

Dolphinfish (Mahimahi) are a high-demand resource for sport and coastal fisheries, mainly in the Pacific Ocean. Due to their economic and ecological importance, studies of their biology are very important to understand their function in ecosystems. We used stable isotope and stomach content analyses to determine the most important prey of the common dolphinfish, as well as the trophic level of this species in two areas of the southern Gulf of California. Stomach contents of 445 specimens were analysed. Using both techniques, we found that the most important prey for dolphinfish in the southern Gulf of California were three invertebrate species followed by fish. This contrasts with results from other authors who found that this species was mainly piscivorous in other locations. Stomach content analysis indicated differences in prey biomass by area, season and size class. The isotopic analysis did not show significant differences between seasons or sexes. Both stomach contents and stable isotope analyses showed that although this predator consumed a wide prey spectrum, only a few prey items made up the bulk of the diet, which resulted in a low SD in δ15N values and low Levin's index values. We conclude that this fish is an opportunistic predator that may consume a wide prey spectrum, but that it mainly consumes prey that are abundant in the area, such as crustaceans and cephalopods in the Gulf of California.

No abstract