Nitrogen (N) is an important nutrient for the growth and development of rice. The application of N fertilizer has become one of the inevitable ways to increase rice yield due to insufficient soil N content. However, in order to achieve stable and high yield, farmers usually increase N fertilizer input without hesitation, resulting in a series of problems such as environmental pollution, energy waste and low production efficiency. For sustainable agriculture, improving the nitrogen use efficiency (NUE) to decrease N fertilizer input is imperative. In the present review, we firstly demonstrate the role of N in mediating root architecture, photosynthesis, metabolic balance, and yield components in rice. Furthermore, we further summarize the current agronomic practices for enhancing rice NUE, including balanced fertilization, the use of nitrification inhibitors and slow-release N fertilizers, the split application of N fertilizer, root zone fertilization, and so on. Finally, we discuss the recent advances of N efficiency-related genes with potential breeding value. These genes will contribute to improving the N uptake, maintain the N metabolism balance, and enhance the NUE, thereby breeding new varieties against low N tolerance to improve the rice yield and quality. Moreover, N-efficient varieties also need combine with precise N fertilizer management and advanced cultivation techniques to realize the maximum exploitation of their biological potential.
Tudor domain-containing (TDRD) proteins, the germline enriched protein family, play essential roles in the process of gametogenesis and genome stability through their interaction with the PIWI-interacting RNA (piRNA) pathway. Several studies have suggested the rapid evolution of the piRNA pathway in teleost lineages with striking reproductive diversity. However, there is still limited information about the function and evolution of Tdrd genes in teleost species. In this study, through genome wide screening, 13 Tdrd family genes were identified in economically important aquaculture fish, including spotted sea bass (Lateolabrax maculatus), Asian sea bass (Lates calcarifer), and tongue sole (Cynoglossus semilaevis). With copy number, structure, phylogeny, and synteny analysis, duplication of Tdrd6 and Tdrd7, as well as loss of Stk31 and Tdrd10, were characterized in teleost lineages. Codon based molecular evolution analysis indicated faster evolution of teleost Tdrd genes than that in mammals, potentially associated with the accelerated evolution of the piRNA pathway in teleost lineages. The evolutionary diversity of Tdrd genes was also detected between different teleost lineages. RNA-seq analysis showed that most teleost Tdrd genes were dominantly expressed in gonads, particularly highly expressed in testis, such as Tdrd6, Tdrd7a, Tdrd9, Ecat8, and Tdrd15. The varied expression and evolutionary pattern between the duplicated Tdrd6 and Tdrd7 in teleosts may indicate their functional diversification. All these results suggest a conserved function of teleost Tdrd family in gametogenesis and the piRNA pathway, which could lay a foundation for the evolution of Tdrd genes and be helpful for further deciphering of Tdrd functions in teleosts.
Large areas of tidal flats were previously developed into aquaculture ponds and were recently encouraged to be converted into paddy fields to fulfill food and economic needs in China. However, the influences of short-term rice cultivation at the reclaimed aquaculture ponds on soil chemical properties and bacterial communities are poorly understood. To address this issue, we collected mineral soil samples at 0–20 and 20–40 cm depths from non-cultivated soils and paddy fields after being reclaimed from aquaculture ponds in Nantong, China, and identified soil bacterial communities using high-throughput sequencing. The results suggested that rice cultivation significantly increased the accumulation of total soil carbon (TC) and dissolved organic carbon (WSOC). The pH, ammonium (NH4+), nitrate (NO3−) and available phosphorus (AP) varied with the reclamation duration but did not show a unanimous tendency. Proteobacteria, Acidobacteria, Bacteroidetes, Chloroflexi and Planctomycetes dominated the bacterial community in both non-cultivated and cultivated soils after reclamation regardless of cultivation ages and soil depth. The variations in the diversity and composition of the soil microbial community were mainly associated with electrical conductivity (EC), WSOC, TC, NH4+ and NO3− in non-cultivated and cultivated lands. Here, we found that short-term rice cultivation at the reclaimed aquaculture ponds strongly influenced soil bacterial communities and chemical properties, especially in the 0–20 cm depth, in the coastal regions.
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