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This data paper reports census data of ground‐dwelling beetle and other fauna of the forest floor environment; collections were made from a network of 22 forest sites in Japan. To our knowledge, this represents the largest dataset for long‐term monitoring of a ground‐dwelling beetle community and other taxa in a ground environment in forests, which covers a broad climatic range in the temperate zone and is freely available. The network forms part of the Monitoring Sites 1000 Project launched by the Ministry of the Environment, Japan. It covers subalpine, cool‐ and warm‐temperate and subtropical climatic zones and the four major forest types of Japan. Thirty‐three permanent plots usually 1 ha in size were established in old‐growth, secondary natural and a few plantation forests. Censuses of the ground‐dwelling beetle community were conducted using pitfall trapping and forest floor environment monitoring every year from 2004 to the present. During the initial 9 years of the census (2004–2012), 59,762 beetle individuals (including 3182 larvae) of more than 314 species were recorded. This dataset includes taxonomy and biomass of each beetle individual and each taxonomic group of other invertebrates coincidently captured in pitfall trapping. The dataset also includes data related to ground coverage by forest floor vegetation, dry mass of the accumulated organic litter layer, and carbon and nitrogen contents and cellulose decomposition rate in organic layer and surface mineral soil. The data could be used to investigate geographical patterns and intra‐ and inter‐annual dynamics of individual body mass, populations and community structures of ground‐dwelling beetles, and their relationships with the forest floor environment. Furthermore, the data could be analyzed with other open datasets related to tree community dynamics and litter fall continuously measured in the same study plots. This dataset also provides information related to the distribution and average body mass of each beetle species.

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The Amami rabbit Pentalagus furnessi is a rare forest‐dwelling form endemic to the Amami and Tokuno Islands in Japan. In order to estimate the distribution and abundance of the Amami rabbit we counted their faecal pellets along forest roads and streams as well as within the forests on Amami and Tokuno Islands during January 1993–March 1995. The number of pellets/km along a stream gave a practical index for measuring relative abundance. The rabbit was estimated to be distributed over about 370 sq km on Amami Island and 33 sq km on Tokuno Island. There was a large variance in faecal abundance among the survey routes. Some populations were completely isolated and thought to be very small. The size of a local population was positively correlated with those of neighbouring populations and the amount of mature forest relative to other seral stages. We compared the results of this survey with those of previous surveys to find that the total population of this species appears to be declining. Some conservation measures are proposed for forest habitat management, designed to avert the decline of the Amami rabbit and to ensure its preservation.

To profile secondary succession after clearcutting a conifer plantation, we examined the composition of the soil seed bank and the process of vegetation recovery after clearcutting a mature Hinoki (Chamaecyparis obtusa) plantation in southwest Japan. We set up two study plots and collected 25 and 26 soil samples (each 20 cm 9 30 cm 9 5 cm depth), respectively, in April 1999, before clearcutting. Using the seedling emergence method, we detected 500-839 buried viable seeds m -2 in 42-44 species. Soil seed banks in both plots contained typical pioneer species but few late-successional species. After clearfelling the plantation in June 1999, we censused seedling establishment for 4 years and the composition of the vegetation for 6 years. More than half of the seedlings emerged in the second year, suggesting that the timing of clearcutting is possibly critical to seedling establishment. Nineteen plant species disappeared after clearcutting, 40 species were retained and 43 species newly emerged after clearcutting. Most of the newly emerged species were pioneer species which originated in the soil seed bank. Seven of the pioneer species, as typified by Rubus crataegifolius, showed clonal growth from the third year after clearcutting. Japanese serow browsed the seedlings of major pioneer species, possibly affecting the process of secondary succession. Late-successional species such as Abies firma declined in coverage or disappeared after clearcutting. Our results suggest that the soil seed bank makes a major contribution to vegetation recovery after clearcutting, but possibly not to restoration of the late-successional species.