Scientific findings need to be verifiable and grounded in repeatability. With specimen-level research this is in part achieved with the deposition of voucher specimens. These are labeled, curated, data-based specimens that have been deposited in a collection or museum, available for verification of the work and to ensure researchers are calling the same taxa by the same names. Voucher specimens themselves are the subject of research, from the discovery of new species by taxonomists to ecologists documenting historical records of invasive species. Our objective was to quantify the frequency of voucher specimen deposition in biodiversity and community ecology research through a survey of the peer-reviewed literature about arthropods, from 1989 until 2014. Overall rates of voucher deposition were alarmingly low, at under 25%. This rate increased significantly over time, with 35% of papers reporting on vouchers in 2014. Relative to the global mean, entomological research had a significantly higher rate of voucher deposition (46%), whereas researchers studying crustaceans deposited vouchers less than 6% of the time, significantly less than the mean. Researchers working in museums had a significantly higher frequency of voucher deposition. Our results suggest a significant culture shift about the process of vouchering specimens is required. There must be more education and mentoring about voucher specimens within laboratories and across different fields of study. Principal investigators and granting agencies need a proactive approach to ensuring specimen-level data are properly, long-term curated. Editorial boards and journals can also adopt policies to ensure papers are published only if explicit statements about the deposition of voucher specimens is provided. Although the gap is significant, achieving a higher rate of voucher specimen deposition is a worthy goal to ensure all research efforts are preserved for future generations.

Since its discovery in 1975, Lyme disease has spread and increased in much of central and eastern United States. Host diversity is thought to play a role in Lyme disease risk, and it has been suggested that the direction of the relationship between host diversity and disease risk may vary depending on the spatial scale of observation. Here we modelled the effect of mammal host species richness on the incidence of Lyme disease from 1992 to 2011 across all states in the United States with reported or established black-legged tick (Ixodes scapularis) populations. We tested two contrasting hypotheses: a positive vs. a negative relationship between host species richness and Lyme disease incidence. We also tested the hypothesis that the strength of the diversity-disease-risk relationship increased over time, as Lyme disease spread. We observed a strong negative relationship between mammal host species richness and Lyme disease incidence, and this relationship became more negative over time. Lyme disease increased over time more rapidly in host species-poor states than host species-rich states. Our findings support the importance of mammal host richness on Lyme disease risk at large spatial scales, and the importance of spatial and temporal scales on the diversity-disease relationship.

How species richness is distributed across trophic levels determines several dimensions of ecosystem functioning, including herbivory, predation, and decomposition rates. We perform a meta-analysis of 72 large published food webs to investigate their trophic diversity structure and possible endogenous, exogenous, and methodological causal variables. Consistent with classic theory, we found that published food webs can generally be described as 'pyramids of species richness'. The food webs were more predator-poor, prey-rich and hierarchical than is expected by chance or by the niche or cascade models. The trophic species richness distribution also depended on centrality, latitude, ecosystem-type and methodological bias. Although trophic diversity structure is generally pyramidal, under many conditions the structure is consistently uniform or inverse-pyramidal. Our meta-analysis adds nuance to classic assumptions about food web structure: diversity decreases with trophic level, but not under all conditions, and the decrease may be scale-dependent.

Summary Microbial metabolism of the thawing organic carbon stores in permafrost results in a positive feedback loop of greenhouse gas emissions. CO2 and CH4 fluxes and the associated microbial communities in Arctic cryosols are important in predicting future warming potential of the Arctic. We demonstrate that topography had an impact on CH4 and CO2 flux at a high Arctic ice‐wedge polygon terrain site, with higher CO2 emissions and lower CH4 uptake at troughs compared to polygon interior soils. The pmoA sequencing suggested that USCα cluster of uncultured methanotrophs is likely responsible for observed methane sink. Community profiling revealed distinct assemblages across the terrain at different depths. Deeper soils contained higher abundances of Verrucomicrobia and Gemmatimonadetes, whereas the polygon interior had higher Acidobacteria and lower Betaproteobacteria and Deltaproteobacteria abundances. Genome sequencing of isolates from the terrain revealed presence of carbon cycling genes including ones involved in serine and ribulose monophosphate pathways. A novel hybrid network analysis identified key members that had positive and negative impacts on other species. Operational Taxonomic Units (OTUs) with numerous positive interactions corresponded to Proteobacteria, Candidatus Rokubacteria and Actinobacteria phyla, while Verrucomicrobia and Acidobacteria members had negative impacts on other species. Results indicate that topography and microbial interactions impact community composition.

Because antipredator behaviours are costly, the threat-sensitive predator avoidance hypothesis predicts that individual animals should express predator-avoidance behaviour proportionally to the perceived threat posed by the predator. Here, we experimentally tested this hypothesis by providing wild passerine birds supplemental food (on a raised feeding platform) at either 1 or 4 m from the edge of forest cover (potential refuge), in either the presence or absence of a nearby simulated predation threat (a sharp-shinned hawk Accipiter striatus model). Compared with the control treatment, we observed proportionally fewer bird visits to the food patch, and the birds took longer to re-emerge from forest refuge and return to feed at the food patch, after the hawk presentation than before it. The observed threat-sensitive latency-to-return response was stronger when the food patch was further away from the nearest refuge. Overall, our results are consistent with the predictions of the threat-sensitive predator avoidance hypothesis in that wild passerine birds (primarily black-capped chickadees Poecile atricapillus) exhibited more intense antipredator behavioural responses with increasing level of apparent threat. The birds were thus sensitive to their local perceived threat of predation and traded-off safety from predation (by refuging) and foraging gains in open habitat in a graded, threat-sensitive manner.