Linked Open Data (LOD) has emerged as one of the largest collections of interlinked structured datasets on the Web. Although the adoption of such datasets for applications is increasing, identifying relevant datasets for a specific task or topic is still challenging. As an initial step to make such identification easier, we provide an approach to automatically identify the topic domains of given datasets. Our method utilizes existing knowledge sources, more specifically Freebase, and we present an evaluation which validates the topic domains we can identify with our system. Furthermore, we evaluate the effectiveness of identified topic domains for the purpose of finding relevant datasets, thus showing that our approach improves reusability of LOD datasets.

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BackgroundResearch on the biology of parasites requires a sophisticated and integrated computational platform to query and analyze large volumes of data, representing both unpublished (internal) and public (external) data sources. Effective analysis of an integrated data resource using knowledge discovery tools would significantly aid biologists in conducting their research, for example, through identifying various intervention targets in parasites and in deciding the future direction of ongoing as well as planned projects. A key challenge in achieving this objective is the heterogeneity between the internal lab data, usually stored as flat files, Excel spreadsheets or custom-built databases, and the external databases. Reconciling the different forms of heterogeneity and effectively integrating data from disparate sources is a nontrivial task for biologists and requires a dedicated informatics infrastructure. Thus, we developed an integrated environment using Semantic Web technologies that may provide biologists the tools for managing and analyzing their data, without the need for acquiring in-depth computer science knowledge.Methodology/Principal FindingsWe developed a semantic problem-solving environment (SPSE) that uses ontologies to integrate internal lab data with external resources in a Parasite Knowledge Base (PKB), which has the ability to query across these resources in a unified manner. The SPSE includes Web Ontology Language (OWL)-based ontologies, experimental data with its provenance information represented using the Resource Description Format (RDF), and a visual querying tool, Cuebee, that features integrated use of Web services. We demonstrate the use and benefit of SPSE using example queries for identifying gene knockout targets of Trypanosoma cruzi for vaccine development. Answers to these queries involve looking up multiple sources of data, linking them together and presenting the results.Conclusion/SignificanceThe SPSE facilitates parasitologists in leveraging the growing, but disparate, parasite data resources by offering an integrative platform that utilizes Semantic Web techniques, while keeping their workload increase minimal.

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The Linked Open Data (LOD) cloud has gained significant attention in the Semantic Web community over the past few years. With rapid expansion in size and diversity, it consists of over 800 interlinked datasets with over 60 billion triples. These datasets encapsulate structured data and knowledge spanning over varied domains such as entertainment, life sciences, publications, geography, and government. Applications can take advantage of this by using the knowledge distributed over the interconnected datasets, which is not realistic to find in a single place elsewhere. However, two of the key obstacles in using the LOD cloud are the limited support for data integration tasks over concepts, instances, and properties, and relevant data source selection for querying over multiple datasets. We review, in brief, some of the important and interesting technical approaches found in the literature that address these two issues. We observe that the general purpose alignment techniques developed outside the LOD context fall short in meeting the heterogeneous data representation of LOD. Therefore, an LOD specific review of these techniques (especially for alignment) is important to the community. The topics covered and discussed in this article fall under two broad categories, namely alignment techniques for LOD datasets and relevant data source selection in the context of query processing over LOD datasets.

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Abstract-Clinical documents are vital resources for radiologists to have a better understanding of patient history. The use of clinical documents can complement the often brief reasons for exams that are provided by physicians in order to perform more informed diagnoses. With the large number of study exams that radiologists have to perform on a daily basis, it becomes too time-consuming for radiologists to sift through each patient's clinical documents. It is therefore important to provide a capability that can present contextually relevant clinical documents, and at the same time satisfy the diverse information needs among radiologists from different specialties. In this work, we propose a knowledge-based semantic similarity approach that uses domain-specific relationships such as part-of along with taxonomic relationships such as is-a to identify relevant radiology exam records. Our approach also incorporates explicit relevance feedback to personalize radiologists information needs. We evaluated our approach on a corpus of 6,265 radiology exam reports through study sessions with radiologists and demonstrated that the retrieval performance of our approach yields an improvement of 5% over the baseline. We further performed intra-class and inter-class similarities using a subset of 2,384 reports spanning across 10 exam codes. Our result shows that intra-class similarities are always higher than the inter-class similarities and our approach was able to obtain 6% percent improvement in intra-class similarities against the baseline. Our results suggest that the use of domain-specific relationships together with relevance feedback provides a significant value to improve the accuracy of the retrieval of radiology exam reports.

Most of the existing benchmark systems for federated SPARQL query systems rely on a set of predefined static queries over a particular set of data sources. Such benchmark are useful for comparing general purpose SPARQL query federation systems such as FedX, SPLENDID etc. However, special purpose federation systems such as TopFed, SAFE etc. cannot be tested with these static benchmarks since these systems only operate on a specific data sets and the corresponding queries. To facilitate the process of benchmarking for such special purpose SPARQL query federation systems, we propose QFed, a dynamic SPARQL query set generator that takes into account the characteristics of both dataset and queries along with the cost of data communication. Our experimental results show that QFed can successfully generate a large set of meaningful federated SPARQL queries to be considered for the performance evaluation of different federated SPARQL query engines. FedBench [10], to the best of our knowledge, is the only SPARQL query federation benchmark that encompass real queries (i.e., showing typical requests) spanning (collects data) over multiple real 2 TopFed engine: RELATED WORKS