Like ecological communities, which vary in species composition, eukaryote genomes differ in the amount and diversity of transposable elements (TEs) that they harbor. Because TEs have a considerable impact on the biology of their host species, we need to better understand whether their dynamics reflects some form of organization or is primarily driven by stochastic processes. Here we borrow ecological concepts on species diversity to explore how interactions between TEs can contribute to structure TE communities within their genomic ecosystem. Whereas the niche theory predicts a stable diversity of TEs because of their divergent characteristics, the neutral theory of biodiversity predicts the assembly of TE communities from stochastic processes acting at the level of individual TE. Contrary to ecological communities, however, TE communities are shaped by selection at the level of their ecosystem, i.e., the host individual. Developing ecological models specific to the genome will thus be pre-requisite for modeling the dynamics of TEs. Towards an ecology of the genomeTransposable elements (TEs) constitute a large proportion of many multicellular eukaryote genomes, from 4% in the yeast Saccharomyces cerevisiae to more than 70 % in some plants and amphibians, and 45% in human [1]. The mobility and amplification of TEs represent a major source of genomic variation either by virtue of their insertion or by triggering a variety of small-and large-scale chromosomal rearrangements. Once inserted, most TE copies serve no immediate function and thus their sequences progressively decay by accumulating mutations at the neutral rate of the species and eventually disappear. Occasionally, some TE copies may be co-opted by the genome to function either as coding sequences or as regulatory elements [2]. Whereas TEs can be said to contribute genetic variation and therefore innovation [1][2][3][4][5][6], their uncontrolled movement and proliferation pose a threat to genome integrity. Indeed, TEs are an important cause of deleterious mutations and illnesses, including in humans [7][8], and therefore several host-encoded mechanisms exist to silence or restrict their activity [9][10][11][12].TEs are classified into different classes and subclasses on the basis of their structural organization and of mechanisms of transposition (DNA transposons, Long Terminal Repeat (LTR) retrotransposons, non-LTR retrotransposons…) [1], and further divided into families and sub-families (see Box 1). Genomes of different organisms contain widely differing numbers of TE families and of TE copy numbers per family (Box 1). The main challenge we are facing is therefore to understand to what extent the contrasted patterns and variations that Corresponding author: Venner, we see across genomes in the amount and diversity of TEs reflect some sort of organization, or whether they are largely idiosyncratic, i.e., the result of stochastic processes. The dynamics of TEs has been modeled on the basis of their transposition and excision rates and their fitne...

International audienceInsects comprise relevant biological models for investigating nutrient acquisition and allocation processes in the context of life-history ecology and evolution. However, empirical investigations are still partly limited by the lack of availability of simple methods for simultaneously estimating the four major energetic components (i.e. lipids, free sugars, glycogen and proteins) in the same individual. In the present work, we validate a fast, reproducible and cheap method for overcoming this problem that uses different solvents successively. First, proteins are solubilized in a phosphate-lysis buffer and then quantified according to the classical Bradford assay procedure. In a second step, a chloroform-methanol mixture is added to the aqueous phase, which allows assay of the total lipid fraction, as well as the free sugars and glycogen in the same insect homogenate. In addition, a micro-separation procedure is adapted to partition the total lipids into neutral (mainly stored lipids) and polar (mainly structural lipids) components. Although these assays are conducted sequentially in the same individual, the sensitivity of our method remains high: the estimated amount of each energetic compartment does not differ from that obtained with former, partial methods. Our method should thus largely improve our knowledge about nutrient acquisition and allocation among insects not only in laboratory-reared individuals, but also in animals caught in the wild. Descriptions and recommendations are given at each step of the protocol to adapt the procedure to various insect species. Finally, to prevent misinterpretation of data generated in accordance with this protocol, the limits of our method are discussed in the light of life-history studies

The impact of rare but positive events on the design of organisms has been largely ignored, probably due to the paucity of recordings of such events and to the difficulty of estimating their impact on lifetime reproductive success. In this respect, we investigated the size of spider webs in relation to rare but large prey catches. First, we collected field data on a short time-scale using the common orb-weaving spider Zygiella x-notata to determine the distribution of the size of prey caught and to quantify the relationship between web size and daily capture success. Second, we explored, with an energetic model, the consequences of an increase in web size on spider fitness. Our results showed that (i) the great majority of prey caught are quite small (body length less than 2mm) while large prey (length greater than 10mm) are rare, (ii) spiders cannot survive or produce eggs without catching these large but rare prey and (iii) increasing web size increases the daily number of prey caught and thus long-term survival and fecundity. Spider webs seem, therefore, designed for making the best of the rare but crucial event of catching large prey.

BackgroundOne major challenge in understanding how biodiversity is organized is finding out whether communities of competing species are shaped exclusively by species-level differences in ecological traits (niche theory), exclusively by random processes (neutral theory of biodiversity), or by both processes simultaneously. Communities of species competing for a pulsed resource are a suitable system for testing these theories: due to marked fluctuations in resource availability, the theories yield very different predictions about the timing of resource use and the synchronization of the population dynamics between the competing species. Accordingly, we explored mechanisms that might promote the local coexistence of phytophagous insects (four sister species of the genus Curculio) competing for oak acorns, a pulsed resource.Methodology/Principal FindingsWe analyzed the time partitioning of the exploitation of oak acorns by the four weevil species in two independent communities, and we assessed the level of synchronization in their population dynamics. In accordance with the niche theory, overall these species exhibited marked time partitioning of resource use, both within a given year and between different years owing to different dormancy strategies between species, as well as distinct demographic patterns. Two of the four weevil species, however, consistently exploited the resource during the same period of the year, exhibited a similar dormancy pattern, and did not show any significant difference in their population dynamics.Conclusions/SignificanceThe marked time partitioning of the resource use appears as a keystone of the coexistence of these competing insect species, except for two of them which are demographically nearly equivalent. Communities of consumers of pulsed resources thus seem to offer a promising avenue for developing a unifying theory of biodiversity in fluctuating environments which might predict the co-occurrence, within the same community, of species that are ecologically either very similar, or very different.

Sexual selection theory traditionally considers choosiness for mates to be negatively related to intra-sexual competition. Males were classically considered to be the competing, but not the choosy, sex. However, evidence of male choosiness is now accumulating. Male choosiness is expected to increase with an individual's competitive ability, and to decrease as intra-sexual competition increases. However, such predictions have never been tested in field conditions. Here, we explore male mate choice in a spider by studying size-assortative pairing in two natural sites that strongly differ in the level of male-male competition. Unexpectedly, our results demonstrate that mate choice shifts from opportunism to high selectivity as competition between males increases. Males experiencing weak competition did not exhibit size-related mating preferences. By contrast, when competition was intense we found strong sizeassortative pairing due to male choice: while larger, more competitive males preferentially paired with larger, more fecund females, smaller males chose smaller females. Thus, we show that mating preferences of males vary with their competitive ability. The distinct preferences exhibited by males of different sizes seem to be an adaptive response to the lower reproductive opportunities arising from increased competition between males.

Male choosiness for mates is an underexplored mechanism of sexual selection. A few theoretical studies suggest that males may exhibit--but only under rare circumstances--a reversed male mate choice (RMMC; i.e., highly competitive males focus on the most fecund females, while the low-quality males exclusively pair with less fecund mates to avoid being outcompeted by stronger rivals). Here we propose a new model to explore RMMC by relaxing some of the restrictive assumptions of the previous models and by considering an extended range of factors known to alter the strength of sexual selection (males' investment in reproduction, difference of quality between females, operational sex ratio). Unexpectedly, we found that males exhibited a reversed mate choice under a wide range of circumstances. RMMC mostly occurs when the female encounter rate is high and males devote much of their time to breeding. This condition-dependent strategy occurs even if there is no risk of injury during the male-male contest or when the difference in quality between females is small. RMMC should thus be a widespread yet underestimated component of sexual selection and should largely contribute to the assortative pairing patterns observed in numerous taxa.

In many perennial wind‐pollinated plants, the dynamics of seed production is commonly known to be highly fluctuating from year to year and synchronised among individuals within populations. The proximate causes of such seeding dynamics, called masting, are still poorly understood in oak species that are widespread in the northern hemisphere, and whose fruiting dynamics dramatically impacts forest regeneration and biodiversity. Combining long‐term surveys of oak airborne pollen amount and acorn production over large‐scale field networks in temperate areas, and a mechanistic modelling approach, we found that the pollen dynamics is the key driver of oak masting. Mechanisms at play involved both internal resource allocation to pollen production synchronised among trees and spring weather conditions affecting the amount of airborne pollen available for reproduction. The sensitivity of airborne pollen to weather conditions might make oak masting and its ecological consequences highly sensitive to climate change.

The changes in reproductive phenology (i.e. timing of flowering and fruiting) observed in recent decades demonstrate that tree reproduction has already been altered by climate change. However, understanding the impact of these changes in reproductive success and fitness remains a major challenge for ecologists. We describe here a previously unreported phenomenon: a significant increase in the reproductive effort (seed production) of temperate oaks with increasing spring temperature, observed over the last decade. In contrast, no relationship was found between seed production and precipitation. This sensitivity of seed production to temperature was confirmed by a “space-for-time” substitution based on elevation gradients. Our findings suggest that global warming may enhance oak reproductive effort in temperate ecosystems. Nevertheless, while fitness can be enhanced by higher levels of seed production, it also depends on the frequency and synchronization of mast seeding production, which may also be influenced by climate change.