SummaryRoot hairs are known to be highly important for uptake of sparingly soluble nutrients, particularly in nutrient deficient soils. Development of increasingly sophisticated mathematical models has allowed uptake characteristics to be quantified. However, modelling has been constrained by a lack of methods for imaging live root hairs growing in real soils.We developed a plant growth protocol and used Synchrotron Radiation X-ray Tomographic Microscopy (SRXTM) to uncover the three-dimensional (3D) interactions of root hairs in real soil. We developed a model of phosphate uptake by root hairs based directly on the geometry of hairs and associated soil pores as revealed by imaging.Previous modelling studies found that root hairs dominate phosphate uptake. By contrast, our study suggests that hairs and roots contribute equally. We show that uptake by hairs is more localized than by roots and strongly dependent on root hair and aggregate orientation.The ability to image hair-soil interactions enables a step change in modelling approaches, allowing a more realistic treatment of processes at the scale of individual root hairs in soil pores.

Summary In this paper, we provide direct evidence of the importance of root hairs on pore structure development at the root–soil interface during the early stage of crop establishment.This was achieved by use of high‐resolution (c. 5 μm) synchrotron radiation computed tomography (SRCT) to visualise both the structure of root hairs and the soil pore structure in plant–soil microcosms. Two contrasting genotypes of barley (Hordeum vulgare), with and without root hairs, were grown for 8 d in microcosms packed with sandy loam soil at 1.2 g cm−3 dry bulk density. Root hairs were visualised within air‐filled pore spaces, but not in the fine‐textured soil regions.We found that the genotype with root hairs significantly altered the porosity and connectivity of the detectable pore space (> 5 μm) in the rhizosphere, as compared with the no‐hair mutants. Both genotypes showed decreasing pore space between 0.8 and 0.1 mm from the root surface. Interestingly the root‐hair‐bearing genotype had a significantly greater soil pore volume‐fraction at the root–soil interface.Effects of pore structure on diffusion and permeability were estimated to be functionally insignificant under saturated conditions when simulated using image‐based modelling.

Root hairs are important sites for nutrient uptake, especially in P limiting conditions. Here we provide first insights into root hair development for the diverse root types of rice grown under different conditions, and show the first in situ images of rice root hairs in intact soil. Roots of plants grown in upland fields produced short root hairs that showed little responsiveness to P deficiency, and had a higher root hair density in the high P condition. These results were reproducible in rhizoboxes under greenhouse conditions. Synchrotron-based in situ analysis of root hairs in intact soil further confirmed this pattern of root hair formation. In contrast, plants grown in nutrient solution produced more and longer root hairs in low P conditions, but these were unequally distributed among the different root types. While nutrient solution-grown main roots had longer hairs compared to upland field-grown main roots, second order lateral roots did not form any root hairs in nutrient solution-grown plants. Furthermore, root hair formation for plants grown in flooded lowland fields revealed few similarities with those grown in nutrient solution, thus defining nutrient solution as a possible measure of maximal, but not natural root hair development. By combining root hair length and density as a measure for root hair impact on the whole soil-grown root system we show that lateral roots provided the majority of root hair surface.

Background Plant-soil interaction is central to human food production and ecosystem function. Thus, it is essential to not only understand, but also to develop predictive mathematical models which can be used to assess how climate and soil management practices will affect these interactions. Scope In this paper we review the current developments in structural and chemical imaging of rhizosphere processes within the context of multiscale mathematical image based modeling. We outline areas that need more research and areas which would benefit from more detailed understanding. Conclusions We conclude that the combination of structural and chemical imaging with modeling is an incredibly powerful tool which is fundamental for understanding how plant roots interact with soil. We emphasize the need for more researchers to be attracted to this area that is so fertile for future discoveries. Finally, model building must go hand in hand with experiments. In particular, there is a real need to integrate rhizosphere structural and chemical imaging with modeling for better understanding of the rhizosphere processes leading to models which explicitly account for pore scale processes.

Summary Soil adjacent to roots has distinct structural and physical properties from bulk soil, affecting water and solute acquisition by plants. Detailed knowledge on how root activity and traits such as root hairs affect the three‐dimensional pore structure at a fine scale is scarce and often contradictory. Roots of hairless barley (Hordeum vulgare L. cv Optic) mutant (NRH) and its wildtype (WT) parent were grown in tubes of sieved (<250 μm) sandy loam soil under two different water regimes. The tubes were scanned by synchrotron‐based X‐ray computed tomography to visualise pore structure at the soil–root interface. Pore volume fraction and pore size distribution were analysed vs distance within 1 mm of the root surface. Less dense packing of particles at the root surface was hypothesised to cause the observed increased pore volume fraction immediately next to the epidermis. The pore size distribution was narrower due to a decreased fraction of larger pores. There were no statistically significant differences in pore structure between genotypes or moisture conditions. A model is proposed that describes the variation in porosity near roots taking into account soil compaction and the surface effect at the root surface.

BackgroundUnderstanding the three-dimensional (3-D) micro-architecture of lung tissue can provide insights into the pathology of lung disease. Micro computed tomography (µCT) has previously been used to elucidate lung 3D histology and morphometry in fixed samples that have been stained with contrast agents or air inflated and dried. However, non-destructive microstructural 3D imaging of formalin-fixed paraffin embedded (FFPE) tissues would facilitate retrospective analysis of extensive tissue archives of lung FFPE lung samples with linked clinical data.MethodsFFPE human lung tissue samples (n = 4) were scanned using a Nikon metrology µCT scanner. Semi-automatic techniques were used to segment the 3D structure of airways and blood vessels. Airspace size (mean linear intercept, Lm) was measured on µCT images and on matched histological sections from the same FFPE samples imaged by light microscopy to validate µCT imaging.ResultsThe µCT imaging protocol provided contrast between tissue and paraffin in FFPE samples (15mm x 7mm). Resolution (voxel size 6.7 µm) in the reconstructed images was sufficient for semi-automatic image segmentation of airways and blood vessels as well as quantitative airspace analysis. The scans were also used to scout for regions of interest, enabling time-efficient preparation of conventional histological sections. The Lm measurements from µCT images were not significantly different to those from matched histological sections.ConclusionWe demonstrated how non-destructive imaging of routinely prepared FFPE samples by laboratory µCT can be used to visualize and assess the 3D morphology of the lung including by morphometric analysis.

Aims Plant root system architecture adapts to the prevailing soil environment and the distribution of nutrients. Many species respond to localised regions of high nutrient supply, found in the vicinity of fertiliser granules, by elevating branching density in these areas. However, observation of these adaptations is frequently limited to plants cultured in idealised materials (e.g., hydrogels) which have a structure-less, homogenous matrix, which are spatially limited and in the case of rhizotron observation provide only 2D data that are not fully quantitative. Methods In this study, in vivo, time resolved, microfocus X-ray CT imaging (μCT) in 3D was used to visualise, quantify and assess root/fertiliser interactions of wheat plants in an agricultural soil during the entire plant life cycle. Two contrasting fertilisers [Triple superphosphate (TSP) and struvite (Crystal Green®)] were applied according to 3 different treatments, each providing an equivalent of 80 kg P 2 O 5 ha −1 (struvite only, TSP only and a 50:50 mixture) to each plant. μCT scans (60 μm spatial resolution) of the plant roots were obtained over 14 weeks.Results This is the first time that in situ root/soil/ fertiliser interactions have been visualised in 3D from plant germination through to maturity. Results show that lateral roots tend to pass within a few millimetres of the phosphorus (P) source. At this length scale, roots are able to access the P diffusing from the granule. Conclusions Quantitative analysis of root/fertiliser interactions has shown that rooting density correlates with granule volume-loss for a slow release, struvite fertiliser.

HighlightRigorous mathematical techniques and image-based modelling were used to quantify the effect of root hairs on nutrient uptake and to investigate how uptake is influenced by growing root hairs.