Background Rice (Oryza sativa L.) is one of the most important crops of the world and a major staple food for half of the World’s human population. The Northeastern (NE) region of India lies in the Indo-Burma biodiversity hotspot and about 45% of the total flora of the country is found in the region. Local rice cultivars from different states of NE India were analyzed for genetic diversity and population structure using microsatellite markers, and their zinc and iron content. Results A total of 149 bands were detected using twenty-two microsatellite markers comprising both random and trait-linked markers, showing 100% polymorphism and high value of expected heterozygosity (0.6311) and the polymorphism information content (0.5895). Nali Dhan cultivar of Arunachal Pradesh possessed the highest genetic diversity (0.3545) among studied populations while Moirangphou Khonganbi of Manipur exhibited the lowest genetic diversity (0.0343). The model-based population structure revealed that all the studied 65 rice cultivars were grouped into two clusters. Cluster I was represented by 36 cultivars and cluster II by 29 cultivars. Badalsali cultivar of Assam possessed the highest Zn content (75.8 μg/g) and Kapongla from Manipur possessed the lowest (17.98 μg/g). The highest and the lowest Fe content was found in Fazu (215.62 μg/g) and Idaw (11.42 μg/g) of Mizoram. Conclusion The result suggested rice cultivars of NE India possessing high genetic diversity (Nali Dhan), high Zn (Badalsali) and Fe (Fazu) content can be useful as a source of germplasm for future rice improvement programs.
Sapria himalayana Griff. is a rare and endangered holoparasitic plant that prefers a specific host (Tetrastigma sp.). It is one of the lesser-known and poorly understood plants facing threats of extinction owing to human interference in the evergreen forests of Mizoram. The flower is the only visible part of this endophyte and blooms from November to December. The plant was encountered for the first time in the evergreen forest near Rullam village in the Serchhip District of Mizoram, India. In the present study, DNA barcoding was used to identify the plants, and the internal transcribed spacer 2 (ITS2) region of S. himalayana was amplified and sequenced. The ITS2 sequence could accurately identify up to the species level for this endangered species. The absence of the ribulose-biphosphate carboxylase gene (rbcL) region in the genome supports its holoparasitic nature. Hence, DNA barcoding can help in taxonomic and biodiversity research and aid in selecting taxa for various molecular ecology and population genetics studies. The phylogenetic tree was analyzed using the maximum-likelihood method, and our findings showed that species from different families were clearly discriminated in a phylogenetic tree. To the best of our knowledge, this is the first report of DNA barcoding using ITS2 region of S. himalayana from Mizoram, India.
Okra enation leaf curl disease (OELCuD) is a recently emerged whitefly insect vector transmissible viral disease of okra which adversely affects the quality and quantity of okra fruits. Okra enation leaf curl virus (OELCuV) is a main disease causative agent. Two year (kharif 2018 and 2019) field experiments were conducted at research farm of ICAR-National Bureau of Plant Genetic Resources, Pusa, New Delhi for field screening of 10 wild okra (Abelmoschus moschatus ssp. moschatus) accessions, viz. EC360586, EC360794, EC360830, EC360900, EC359730, EC359836, EC359870, EC360351, EC361111 and EC361171. Out of 10 accessions, 4 accessions, viz. EC360794, EC360586, EC360830 and EC361171 showed resistance (R) reaction in both the seasons. Whitefly population was also monitored in both the rainy (kharif) season, since, OELCuD is transmitted by whitefly insect vector. Majority (>77%) of okra genotypes were moderately preferred by the whiteflies. To further validate the resistance reaction in these 4 field resistant accessions, artificial screening experiment was conducted using viruliferous whitefly vector and VRO 6 as susceptible check. Prominent okra enation leaf curl symptom appeared after a minimum incubation period of 15 days under controlled conditions. Betasatellite (DNA-β) molecule of OELCuV was amplified (1.3 kb) using PCR for virus detection and these 4 accessions were found free from virus. These 4 promising accessions would serve as resistance source in breeding programmes to develop varieties resistant to OELCuV.
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