Perhitungan dilakukan untuk menganalisis potensi energi air hingga estimasi energi daya yang dihasilkan. PLTMH Pulau Timun mengoptimalkan debit aliran 2,55 m 3 /s dari lebar Sungai Air Mannaijau yang mencapai 7,5 m serta kedalamn sungai rata-rata 0,38 m. Berdasarkan data pengukuran hidrografi dan topografi tersebut, maka Sungai Air Mannaijau diestimasikan mampu mewujudkan potensi daya total pembangkit listrik sebesar 87,46 kW.
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