Background Bovine trypanosomosis transmitted by tsetse flies is a major constraint to cattle health and productivity in all sub-Saharan countries, including Uganda. The objectives of this study were to determine the prevalence of bovine trypanosomosis and identify its associated risk factors and the species of trypanosomes associated with the disease. Methodology A cross-sectional study was conducted around Murchison Falls National Park, Uganda from January 2020 to April 2020. Trypanosomes were detected in blood samples by PCR analysis targeting the internal transcribed spacer 1 (ITS-PCR assays), and trypanosomes in positive blood samples were sequenced. Results Of 460 blood samples collected and tested, 136 (29.6%) were positive for trypanosome infections and 324 (70.4%) were negative. The overall trypanosome prevalence was 29.6% (95% confidence interval 25.4–33.8%), attributed to three trypanosome species. Of these three species, Trypanosoma vivax was the most prevalent (n = 130, 28.3%) while the others were detected as mixed infections: T. vivax + Trypanosomacongolense (n = 2, 0.4%) and T. vivax + Trypanosomaevansi (n = 1, 0.2%). There were significant differences in trypanosome prevalence according to sex (χ2 = 62, df = 1, P < 0.05), age (χ2 = 6.28, df = 2, P = 0.0043) and cattle breed (χ2 = 10.61, df = 1, P = 0.001). Conclusions Trypanosomosis remains a major limitation to cattle production around Murchison Falls National Park and interventions are urgently needed. In our study, the prevalence of trypanosome infections was high, with T. vivax identified as the most prevalent species. Age, sex and breed of cattle were risk factors for trypanosome infection. Graphical Abstract

Blood samples were collected from pigs at six abattoirs in the Kampala, Uganda metropolitan area from May 2021 through June 2022, and tested for African swine fever virus. Thirty-one samples with cycle threshold values < 26 from pigs with different geographic origins, clinical and pathologic signs, and Ornithodoros moubata exposure underwent whole genome sequencing. The p72 gene was used to genotype the isolates, and all were found to be genotype IX; whole genome sequences to previous genotype IX isolates confirmed their similarity. Six of the isolates had enough coverage to evaluate single nucleotide polymorphisms (SNPs). Five of the isolates differed from historic regional isolates, but had similar SNPs to one another, and the sixth isolate also differed from historic regional isolates, but also differed from the other five isolates, even though they are all genotype IX. Whole genome sequencing data provide additional detail on viral evolution that can be useful for molecular epidemiology, and understanding the impact of changes in genes to disease phenotypes, and may be needed for vaccine targeting should a commercial vaccine become available. More sequencing of African swine fever virus isolates is needed in Uganda to understand how and when the virus is changing.

Use of meat juice and muscle swabs at slaughterhouses may provide an easy-to-collect sample for African swine fever (ASF) surveillance. Meat juice has been experimentally shown to be a reliable sample for the detection of ASF virus (ASFV). We compared the detection of ASFV nucleic acid from diaphragm meat juice, diaphragm muscle swab, spleen, and spleen swabs from pigs with signs of ASFV infection at slaughterhouses around Kampala, Uganda. Pigs with ≥ 2 clinical or pathology signs at the time of slaughter had a spleen sample, spleen swab, diaphragm muscle sample, and diaphragm muscle swab collected. Meat juice was collected from muscle samples through a freeze–thaw cycle. Each sample was tested individually, and 72 spleen, meat juice, and muscle swab sample pools of 4 negative and 1 positive sample were tested, as well. Standard operating procedures from the USDA–Foreign Animal Disease Diagnostic Laboratory for viral DNA extraction and real-time PCR (rtPCR) were used. Of the 493 pigs evaluated, we classified as positive 357 (72.4%) diaphragm meat juice samples, 218 (44.2%) diaphragm muscle swabs, 247 (50.1%) spleen samples, and 241 (48.9%) spleen swabs. All spleen sample pools were positive (72 of 72; 100%), as were 71 of 72 (98.6%) meat juice pools and 67 of 72 (93.1%) muscle swab pools. Meat juice samples provided a reliable sample type for the detection by rtPCR of ASFV in pigs with natural infections.

Proper implementation of biosecurity is currently the only control measure of African swine fever (ASF) in the absence of an effective vaccine or drug against the disease. Despite the efforts that Uganda's local and central governments have invested to reduce livestock diseases, ASF outbreaks still persist in the country. In this study, we assessed the effectiveness of community-led initiatives in the control of ASF in Mukono District, central Uganda. In Mukono district, a community-led pilot program was initiated where stakeholders in the pig value chain organized themselves into an ASF control task force to enforce on-farm and pig value chain activities intended to limit the spread of ASF. Semi-structured interviews with pig famers (n = 211) were conducted in two areas with contrasting practices: one with active community-initiated and monitored ASF control initiatives since 2016 (Kasawo and Namuganga) and the other without such initiative as the control (Mpunge and Ntenjeru). A significant decline (Wilcoxon ranked sign test: Z = − 5.412, p = 0.000) in the annual frequency of ASF outbreaks in both Kasawo and Namuganga sub-counties was observed after the implementation of community-led initiatives. The level of practice of most ASF control measures was significantly higher (p < 0.01) in sub-counties that instituted community-led ASF control initiatives than in the control sub-counties. The results of this study demonstrate the power of community-led initiatives in reducing ASF disease outbreaks in endemic areas.

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Many Ugandans living in the urban and peri-urban areas have started dairy farming to tap into the demand for milk and its products, driven by the population growth. Unfortunately, they operate on a small scale because land and cattle feeds in the urban and peri-urban areas are limited. In addition, the peri-urban areas are contaminated with indigestible materials such as plastic bags which once consumed by the cattle impair health, cause loss of milk productivity and death. This report documents the findings from three cases referred to the ambulatory clinic at the Central Diagnostic Laboratory (CDL) in 2018. The cases were diagnosed as hardware disease and surgically treated by rumenotomy. In addition, a review of the patients’ data sheets in CDL was performed to identify other cases of hardware disease documented in 2018. Both metallic and non-metallic indigestible materials were recovered from the rumen and reticulum of the three animals operated. The indigestible foreign materials included nails, wire, plastic bags and a sisal rope. The common clinical signs coherent with the presence of indigestible materials were chronic emaciation and loss of appetite. The review of the patients’ data sheets showed that blood samples of 23 cases of suspected hardware disease were submitted to CDL in 2018 for diagnosis. It is paramount that farmers are sensitized about the effects of indigestible materials on the production of dairy animals. For, such an intervention would liberate the peri-urban dairy farmers from losses attributed to hardware disease.

Background: Bovine trypanosomosis transmitted by tsetse flies is a major constraint to cattle health and productivity in sub- Saharan countries including Uganda. The objectives of this study were to determine the prevalence of bovine trypanosomosis and its associated risk factors and the species of trypanosomes associated with the disease.Methodology: A cross sectional study was conducted around Murchision Falls National Park, Uganda from January 2020 to April 2020. Blood samples were collected from 460 cattle and were screened for trypanosomes using ITS-PCR. Results: From 460 samples collected, 136 (29.6%) of the samples were positive for trypanosomosis infections while 324 (70.4%) samples were negative. The overall trypanosome prevalence was 29.6% (95% CI 25.4-33.8). T. vivax (n = 130, 28.3%) was the most prevalent trypanosome specie detected and two mixed infection types (T.vivax + T. congolense (n = 2, 0.4%) and T.vivax + T. brucei (n = 1.0, 0.2%) were detected during the analysis. There was a significant difference when Trypanosome prevalence was compared with sex, age, breed of the sampled animals (P < 0.05 for sex), (P = 0.0043 for age) and (P = 0.001 for breed). Conclusion; Trypanosomosis is still a major limitation to cattle production around Murchision Falls National Park and interventions are urgently needed .The prevalence of trypanosomosis was high and T.vivax was identified as the major trypanosome species in the cattle herd.